View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_63 (Length: 459)
Name: NF13763_low_63
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_63 |
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| [»] scaffold0466 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 17 - 456
Target Start/End: Original strand, 20727980 - 20728418
Alignment:
| Q |
17 |
acatgtaacattttctcttaattgtaatagatcatatctggtataatttttgttcatgttaccatgacattgttactaaatatcattattagtagcgagc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
20727980 |
acatgtaacattttctcttaattgtaatagatcatatctggtataatttttgttcatattaccatgacatt-ttactaaatatcattattagtagcgagc |
20728078 |
T |
|
| Q |
117 |
ccatgatgcaagctagataccaagttacacatgtcataatgaaaaaatctaccatgtacattgaaaagctttagatatttaagaaagaatataagagagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20728079 |
ccatgatgcaagctagataccaagttacacatgtcataatgaaaaaatctaccatgtacattgaaaagctttagatatttaagaaagaatataagagagt |
20728178 |
T |
|
| Q |
217 |
tgttgtgccgtgacaaaagtcactgctttaaaagcaaatttctggtggacttcaggtgtaacctaaaattcagttttactctccaaagtttacacaacta |
316 |
Q |
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||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
20728179 |
tgttgtgccgtgacaaaagtcactggtttaaaagcaaatttccggtggacttccggtgtaacctaaaattcagttttgctctccaaaatttacacaacta |
20728278 |
T |
|
| Q |
317 |
cgtgtttgaactgtgcactcgaggccagcctcacaaacaatgtccataaacatagaaagttcatacatcagtgtcactgaggcatattgcatgggtaaga |
416 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20728279 |
cgtgtttgaattgtgcactcgaggccagcctcacaaacaatgtccataaacatagaaagttcatacatcagtgtcactgaggcatattgcatgggtaaga |
20728378 |
T |
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| Q |
417 |
gctaagagggatgcccacaacactagatatttagaataat |
456 |
Q |
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| T |
20728379 |
gctaagagggatgcccacaacactagatatttagaataat |
20728418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 342
Target Start/End: Original strand, 1094410 - 1094544
Alignment:
| Q |
209 |
aagagagttgttgtgccgtgacaaaagtcactgctttaaaagcaaatttctggtgga-cttcaggtgtaacctaaaattcagttttactctccaaagttt |
307 |
Q |
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||||||||||||||||||||||||||||||||| | ||||||||||| |||||| || | |||| |||| |||| | ||||| ||| | || |||| |
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| T |
1094410 |
aagagagttgttgtgccgtgacaaaagtcactgtcctgaaagcaaattttcggtggatctccgggtgcaacc-caaatccggttttgctccctaaggttt |
1094508 |
T |
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| Q |
308 |
acacaactacgtgtttgaact-gtgcactcgaggcc |
342 |
Q |
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|||||||| ||||| |||||| |||||||||||||| |
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| T |
1094509 |
acacaactgcgtgtgtgaactcgtgcactcgaggcc |
1094544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 205 - 343
Target Start/End: Complemental strand, 29360369 - 29360231
Alignment:
| Q |
205 |
atataagagagttgttgtgccgtgacaaaagtcactgctttaaaagcaaatttctggtggacttcaggtgtaacctaaaattcagttttactctccaaag |
304 |
Q |
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|||||||||| |||||||||| ||||||||||||||| || ||||||||||| ||||||| || |||| |||| || || | |||| ||| ||| | |
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| T |
29360369 |
atataagagaattgttgtgccc-gacaaaagtcactgccttgaaagcaaattttcggtggacctccggtgcaacccaatatccgattttgctcctcaagg |
29360271 |
T |
|
| Q |
305 |
tttacacaactacgtgtttgaact-gtgcactcgaggcca |
343 |
Q |
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| T |
29360270 |
tttacacaactgcgtgtctgaattcgtgcacttgaggcca |
29360231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 341
Target Start/End: Original strand, 8253 - 8386
Alignment:
| Q |
209 |
aagagagttgttgtgccgtgacaaaagtcactgctttaaaagcaaatttctggtggacttcaggtgtaacctaaaattcagttttactctccaaagttta |
308 |
Q |
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| T |
8253 |
aagagagttgttgcgccgtggcaaaagcaactgccatgaaagcaaatttccaatggacctctggtgcaatttaatatccggttttgctccccaatgttta |
8352 |
T |
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| Q |
309 |
cacaactacgtgtttgaact-gtgcactcgaggc |
341 |
Q |
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||||||||||||| |||||| ||||||| ||||| |
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| T |
8353 |
cacaactacgtgtctgaactcgtgcacttgaggc |
8386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 345
Target Start/End: Complemental strand, 25358543 - 25358406
Alignment:
| Q |
209 |
aagagagttgttgtgccgtgacaaaagtcactgctttaaaagcaaatttctggtggacttcaggtgtaacctaaaattcagttttactctccaaagttta |
308 |
Q |
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| T |
25358543 |
aagagagatgttgtgccgtggaaaaagtcactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggttta |
25358444 |
T |
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| Q |
309 |
cacaactacgtgtttgaact-gtgcactcgaggccagc |
345 |
Q |
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| T |
25358443 |
cacaactatgtatctgaactcgtgcactcgagaccagc |
25358406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 345
Target Start/End: Complemental strand, 25391574 - 25391437
Alignment:
| Q |
209 |
aagagagttgttgtgccgtgacaaaagtcactgctttaaaagcaaatttctggtggacttcaggtgtaacctaaaattcagttttactctccaaagttta |
308 |
Q |
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||||||| |||||||||||| |||||||||| | ||||||||||| ||||||| || |||| || | || || | ||||| ||| |||| ||||| |
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| T |
25391574 |
aagagagatgttgtgccgtggaaaaagtcactaaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctccccaaggttta |
25391475 |
T |
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| Q |
309 |
cacaactacgtgtttgaact-gtgcactcgaggccagc |
345 |
Q |
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| T |
25391474 |
cacaactatgtatctgaactcgtgcactcgaggccagc |
25391437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 209 - 345
Target Start/End: Complemental strand, 25678198 - 25678061
Alignment:
| Q |
209 |
aagagagttgttgtgccgtgacaaaagtcactgctttaaaagcaaatttctggtggacttcaggtgtaacctaaaattcagttttactctccaaagttta |
308 |
Q |
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||||||| ||||||| |||| ||||| ||||| | ||||||||||| ||||||| || |||| || | || || | ||||| || ||||| ||||| |
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| T |
25678198 |
aagagagatgttgtgtcgtggaaaaagccactgaaatgaaagcaaattttcggtggacctccggtgcaatccaatatccggttttgctttccaaggttta |
25678099 |
T |
|
| Q |
309 |
cacaactacgtgtttgaact-gtgcactcgaggccagc |
345 |
Q |
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||||||||||| | |||||| ||||||||||||||||| |
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| T |
25678098 |
cacaactacgtatctgaactcgtgcactcgaggccagc |
25678061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 343
Target Start/End: Original strand, 16098430 - 16098485
Alignment:
| Q |
289 |
gttttactctccaaagtttacacaactacgtgtttgaact-gtgcactcgaggcca |
343 |
Q |
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| T |
16098430 |
gttttgctcttcaaagtttacacaactacgtgtgtgaactcgttcactcgaggcca |
16098485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 289 - 340
Target Start/End: Complemental strand, 39777450 - 39777398
Alignment:
| Q |
289 |
gttttactctccaaagtttacacaactacgtgtttgaa-ctgtgcactcgagg |
340 |
Q |
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||||| ||| ||||||||||||||||| |||||||||| || ||||||||||| |
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| T |
39777450 |
gttttgctccccaaagtttacacaactgcgtgtttgaacctatgcactcgagg |
39777398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 289 - 323
Target Start/End: Complemental strand, 27049205 - 27049171
Alignment:
| Q |
289 |
gttttactctccaaagtttacacaactacgtgttt |
323 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
27049205 |
gttttgctctccaaagtttacacaactacgtgttt |
27049171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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