View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_64 (Length: 453)

Name: NF13763_low_64
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_64
NF13763_low_64
[»] scaffold0577 (1 HSPs)
scaffold0577 (79-398)||(7970-8291)
[»] chr8 (33 HSPs)
chr8 (1-77)||(41598344-41598420)
chr8 (12-77)||(13507969-13508034)
chr8 (12-77)||(13597501-13597566)
chr8 (15-77)||(17611997-17612059)
chr8 (4-77)||(19801312-19801385)
chr8 (72-114)||(4381493-4381535)
chr8 (72-114)||(6573844-6573886)
chr8 (72-114)||(17979243-17979285)
chr8 (72-114)||(18815700-18815742)
chr8 (72-114)||(18819620-18819662)
chr8 (72-114)||(36405811-36405853)
chr8 (72-114)||(36733393-36733435)
chr8 (71-115)||(22344283-22344327)
chr8 (71-115)||(22355943-22355987)
chr8 (71-114)||(20517948-20517991)
chr8 (71-114)||(23885769-23885812)
chr8 (72-110)||(22207426-22207464)
chr8 (72-114)||(38988545-38988587)
chr8 (72-114)||(39019642-39019684)
chr8 (79-112)||(18815523-18815556)
chr8 (74-114)||(17438085-17438125)
chr8 (74-114)||(17979117-17979157)
chr8 (74-114)||(18819368-18819408)
chr8 (74-114)||(18833778-18833818)
chr8 (74-114)||(20517885-20517925)
chr8 (74-114)||(21677232-21677272)
chr8 (74-114)||(22207617-22207657)
chr8 (74-114)||(22344349-22344389)
chr8 (74-114)||(22356009-22356049)
chr8 (74-114)||(23669985-23670025)
chr8 (74-114)||(31724195-31724235)
chr8 (74-114)||(38988610-38988650)
chr8 (74-114)||(39019707-39019747)
[»] scaffold0007 (2 HSPs)
scaffold0007 (1-77)||(164520-164596)
scaffold0007 (1-77)||(161019-161095)
[»] chr6 (14 HSPs)
chr6 (1-77)||(18456875-18456951)
chr6 (12-77)||(8227395-8227460)
chr6 (74-114)||(22556392-22556432)
chr6 (12-69)||(25644493-25644550)
chr6 (72-115)||(21680686-21680729)
chr6 (71-114)||(35056584-35056627)
chr6 (1-31)||(19847925-19847955)
chr6 (72-114)||(29044445-29044487)
chr6 (74-115)||(35056766-35056807)
chr6 (74-114)||(10445398-10445438)
chr6 (74-114)||(13284956-13284996)
chr6 (74-114)||(18584931-18584971)
chr6 (74-114)||(20411357-20411397)
chr6 (74-114)||(29044510-29044550)
[»] chr4 (26 HSPs)
chr4 (1-77)||(15367850-15367926)
chr4 (1-77)||(15370177-15370253)
chr4 (1-77)||(15371362-15371438)
chr4 (1-77)||(15373643-15373719)
chr4 (1-77)||(15402863-15402939)
chr4 (1-77)||(44102370-44102446)
chr4 (1-77)||(16223692-16223768)
chr4 (1-73)||(22353993-22354065)
chr4 (1-77)||(44928808-44928885)
chr4 (1-77)||(21815515-21815591)
chr4 (77-114)||(45315100-45315137)
chr4 (72-115)||(19566744-19566787)
chr4 (72-115)||(2425382-2425425)
chr4 (71-114)||(9621666-9621709)
chr4 (72-115)||(14507819-14507862)
chr4 (72-115)||(46740330-46740373)
chr4 (72-114)||(12622630-12622672)
chr4 (71-112)||(10272745-10272786)
chr4 (74-115)||(13164429-13164470)
chr4 (77-114)||(55582511-55582548)
chr4 (74-114)||(9923546-9923586)
chr4 (74-114)||(10272811-10272851)
chr4 (74-114)||(11479273-11479313)
chr4 (74-114)||(14508073-14508113)
chr4 (74-114)||(35660157-35660197)
chr4 (79-115)||(46740400-46740436)
[»] scaffold0247 (2 HSPs)
scaffold0247 (1-77)||(2058-2134)
scaffold0247 (12-77)||(17911-17976)
[»] scaffold0001 (1 HSPs)
scaffold0001 (1-77)||(85509-85585)
[»] chr7 (14 HSPs)
chr7 (1-77)||(44116665-44116741)
chr7 (1-77)||(12756601-12756677)
chr7 (1-77)||(17061845-17061921)
chr7 (1-77)||(38898306-38898382)
chr7 (12-77)||(19486628-19486693)
chr7 (12-77)||(10063707-10063772)
chr7 (72-115)||(9743895-9743938)
chr7 (72-114)||(15120073-15120115)
chr7 (71-114)||(30237039-30237082)
chr7 (74-115)||(37538516-37538557)
chr7 (74-115)||(37538670-37538711)
chr7 (74-114)||(8851864-8851904)
chr7 (74-114)||(38294616-38294656)
chr7 (74-114)||(47976263-47976303)
[»] chr3 (22 HSPs)
chr3 (1-77)||(12119654-12119730)
chr3 (1-77)||(17248171-17248247)
chr3 (12-77)||(24340607-24340672)
chr3 (1-77)||(17672782-17672858)
chr3 (1-77)||(53070583-53070659)
chr3 (12-77)||(23274859-23274924)
chr3 (72-114)||(1208761-1208803)
chr3 (72-114)||(17207395-17207437)
chr3 (12-60)||(37642166-37642214)
chr3 (72-115)||(15565769-15565812)
chr3 (72-115)||(24545843-24545886)
chr3 (74-114)||(11191578-11191618)
chr3 (71-114)||(3528244-3528287)
chr3 (71-114)||(25201200-25201243)
chr3 (72-114)||(17044261-17044303)
chr3 (65-114)||(53646722-53646770)
chr3 (74-114)||(3528181-3528221)
chr3 (74-114)||(6806279-6806319)
chr3 (74-114)||(12540567-12540607)
chr3 (79-115)||(14519582-14519618)
chr3 (74-114)||(16180343-16180383)
chr3 (12-60)||(22147427-22147474)
[»] scaffold0056 (2 HSPs)
scaffold0056 (1-77)||(79214-79290)
scaffold0056 (74-114)||(15840-15880)
[»] chr5 (19 HSPs)
chr5 (1-77)||(31061225-31061301)
chr5 (1-77)||(36154713-36154789)
chr5 (1-77)||(11581130-11581205)
chr5 (72-114)||(1628260-1628302)
chr5 (72-114)||(8833986-8834028)
chr5 (72-114)||(14026697-14026739)
chr5 (72-114)||(26749246-26749288)
chr5 (12-60)||(40726025-40726073)
chr5 (73-115)||(660178-660220)
chr5 (72-114)||(8504557-8504599)
chr5 (72-114)||(18743793-18743835)
chr5 (1-31)||(2154589-2154619)
chr5 (1-31)||(20901984-20902014)
chr5 (74-114)||(8833860-8833900)
chr5 (74-114)||(16062863-16062903)
chr5 (74-114)||(21399708-21399748)
chr5 (74-114)||(26749374-26749414)
chr5 (74-114)||(26761688-26761728)
chr5 (74-114)||(26761751-26761791)
[»] chr1 (21 HSPs)
chr1 (12-77)||(21477688-21477753)
chr1 (1-76)||(433166-433242)
chr1 (1-77)||(21347118-21347194)
chr1 (17-77)||(21473120-21473180)
chr1 (2-77)||(21342254-21342329)
chr1 (1-51)||(13212817-13212867)
chr1 (72-114)||(50543846-50543888)
chr1 (72-111)||(7321680-7321719)
chr1 (1-52)||(21707323-21707374)
chr1 (1-52)||(21711865-21711916)
chr1 (72-115)||(28477533-28477576)
chr1 (72-114)||(14793250-14793292)
chr1 (79-114)||(18120732-18120767)
chr1 (72-111)||(24720586-24720625)
chr1 (72-114)||(23073191-23073233)
chr1 (77-114)||(14793780-14793817)
chr1 (74-114)||(7321614-7321654)
chr1 (79-115)||(17903786-17903822)
chr1 (74-114)||(22824111-22824151)
chr1 (74-114)||(34392180-34392220)
chr1 (74-114)||(50544163-50544203)
[»] scaffold0761 (1 HSPs)
scaffold0761 (1-77)||(4453-4529)
[»] scaffold0142 (1 HSPs)
scaffold0142 (1-77)||(16940-17016)
[»] scaffold0031 (1 HSPs)
scaffold0031 (1-77)||(20310-20385)
[»] chr2 (18 HSPs)
chr2 (1-77)||(19671989-19672064)
chr2 (72-114)||(21336506-21336548)
chr2 (72-114)||(25085664-25085706)
chr2 (74-115)||(14184367-14184408)
chr2 (1-34)||(29601495-29601528)
chr2 (74-114)||(14184512-14184552)
chr2 (74-114)||(21368308-21368348)
chr2 (71-114)||(28346010-28346053)
chr2 (72-114)||(21316613-21316655)
chr2 (1-31)||(24529504-24529534)
chr2 (74-115)||(21316410-21316451)
chr2 (74-115)||(21336303-21336344)
chr2 (74-114)||(14184150-14184190)
chr2 (74-114)||(25140520-25140560)
chr2 (74-114)||(25140584-25140624)
chr2 (74-114)||(25587454-25587494)
chr2 (74-114)||(28345826-28345866)
chr2 (74-114)||(36735245-36735285)
[»] scaffold0503 (1 HSPs)
scaffold0503 (1-77)||(12089-12165)
[»] scaffold0413 (1 HSPs)
scaffold0413 (11-70)||(15507-15566)
[»] scaffold0032 (1 HSPs)
scaffold0032 (72-115)||(62913-62956)
[»] scaffold0125 (2 HSPs)
scaffold0125 (72-110)||(27542-27580)
scaffold0125 (74-114)||(27607-27647)
[»] scaffold0063 (1 HSPs)
scaffold0063 (72-114)||(61977-62019)
[»] scaffold0462 (2 HSPs)
scaffold0462 (65-114)||(572-620)
scaffold0462 (65-114)||(6078-6126)
[»] scaffold0086 (2 HSPs)
scaffold0086 (68-113)||(36391-36436)
scaffold0086 (74-114)||(36262-36302)
[»] scaffold0461 (1 HSPs)
scaffold0461 (12-68)||(11636-11692)
[»] scaffold0401 (1 HSPs)
scaffold0401 (72-112)||(8141-8181)
[»] scaffold1354 (2 HSPs)
scaffold1354 (71-114)||(462-505)
scaffold1354 (74-114)||(399-439)
[»] scaffold0213 (2 HSPs)
scaffold0213 (72-111)||(18307-18346)
scaffold0213 (74-114)||(18476-18516)
[»] scaffold0203 (1 HSPs)
scaffold0203 (72-115)||(18993-19036)
[»] scaffold0123 (1 HSPs)
scaffold0123 (72-114)||(16195-16238)
[»] scaffold0149 (1 HSPs)
scaffold0149 (1-31)||(30088-30118)
[»] scaffold0051 (2 HSPs)
scaffold0051 (72-114)||(64794-64836)
scaffold0051 (74-114)||(64731-64771)
[»] scaffold0004 (1 HSPs)
scaffold0004 (72-114)||(66897-66939)
[»] scaffold1160 (1 HSPs)
scaffold1160 (77-114)||(12-49)
[»] scaffold0012 (1 HSPs)
scaffold0012 (12-77)||(225578-225643)
[»] scaffold1186 (1 HSPs)
scaffold1186 (74-114)||(208-248)
[»] scaffold0639 (2 HSPs)
scaffold0639 (74-114)||(7294-7334)
scaffold0639 (74-114)||(7357-7397)
[»] scaffold0628 (2 HSPs)
scaffold0628 (79-115)||(4311-4347)
scaffold0628 (79-115)||(8871-8907)
[»] scaffold0505 (2 HSPs)
scaffold0505 (74-114)||(1928-1968)
scaffold0505 (74-114)||(3948-3988)
[»] scaffold0335 (1 HSPs)
scaffold0335 (74-114)||(1054-1094)
[»] scaffold0231 (1 HSPs)
scaffold0231 (79-115)||(18530-18566)
[»] scaffold0230 (1 HSPs)
scaffold0230 (74-114)||(7554-7594)
[»] scaffold0170 (1 HSPs)
scaffold0170 (74-114)||(3169-3209)
[»] scaffold0113 (1 HSPs)
scaffold0113 (74-114)||(33833-33873)
[»] scaffold0054 (1 HSPs)
scaffold0054 (74-114)||(65694-65734)
[»] scaffold0048 (1 HSPs)
scaffold0048 (72-112)||(56298-56338)
[»] scaffold0020 (1 HSPs)
scaffold0020 (74-114)||(142794-142834)
[»] scaffold0011 (1 HSPs)
scaffold0011 (74-114)||(40339-40379)


Alignment Details
Target: scaffold0577 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 79 - 398
Target Start/End: Original strand, 7970 - 8291
Alignment:
Q  79 tcatcaattatgaacaacatcatgtaacatcatatttttgttcacgcacatatagaacctacgatcattctagcctacctttatgaataaaaattagact 178  Q
    |||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||| ||||||||||||||||    
T  7970 tcattaattacgaacaacatcatataacatcatatttttgttcacgcacatatagaacgtactatcattttagcctacctttacgaataaaaattagact 8069  T
Q  179 aattaaatccactaataagctatagggaacacgtataacactagcatgccagtagcatcacattctcaatggtataacaaattaatcaatcctgcgagga 278  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |    
T  8070 aattaaatccactaataagctataggggacccgtataacactagcatgccagtagcatcacattctcagtggtataacaaattagtcaatcctgcgagta 8169  T
Q  279 cttcttttaaaatcaattatagactagaatggttaaacatggtttgaccacaaattgaagcgtgtggctttttatcaaagcaaatcaattctacatgta- 377  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||  |||||| ||||     
T  8170 tttcttttaaaatcaattatagactagaatggttaaacatggtttgaccacaaattgaaacgtgtggc-ttttatcaaagcaaatcggttctacctgtat 8268  T
Q  378 --ttcttattagctcgtgcgatt 398  Q
      ||||||||||||| |||||||    
T  8269 tcttcttattagctcatgcgatt 8291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 33)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 41598344 - 41598420
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||    
T  41598344 tatcacaatataacaacatcaaatcatcataaatcagtttcacagatcatcattaatattatatataatattcataa 41598420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 13508034 - 13507969
Alignment:
Q  12 aacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||||||||||    
T  13508034 aacaacatcaaatcatcataattcagtttcacagatcatcattaatattataattaatattcataa 13507969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 13597566 - 13597501
Alignment:
Q  12 aacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||| || |||||||||||||||| ||||||||||| ||||||||||||    
T  13597566 aacaacatcaaatcatcataattcagtttcacagatcatcattaatattataattaatattcataa 13597501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 77
Target Start/End: Complemental strand, 17612059 - 17611997
Alignment:
Q  15 aacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||    
T  17612059 aacatcaaatcatcataaatcagcttcacagatcatcattaatattgtaaataatattcataa 17611997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 77
Target Start/End: Complemental strand, 19801385 - 19801312
Alignment:
Q  4 cacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||| ||||| |||||| | |||||||||||||| |||| ||||| | |||||||||||    
T  19801385 cacaatataacaacatcaagtcatcgtaaatcagcttcacagatcatcattaatgttatatacaatattcataa 19801312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 4381535 - 4381493
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||||||||||||||||||||||||| ||||||||    
T  4381535 tcataattcatcaattatgaacaacatcatgtaaaatcatatt 4381493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 6573886 - 6573844
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| |||||||||||||||||||||| |||||||||||||    
T  6573886 tcataattcatcaattatgaacaacatcacgtaacatcatatt 6573844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 17979285 - 17979243
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
T  17979285 tcataattcatcaattataaacaacatcatgtaacatcatatt 17979243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 18815742 - 18815700
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| |||||||||| |||||||||||||||||||||||||    
T  18815742 tcataattcatcaattacgaacaacatcatgtaacatcatatt 18815700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 18819662 - 18819620
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| |||||| |||||||||||||||||||||||||||||    
T  18819662 tcataattcatcagttatgaacaacatcatgtaacatcatatt 18819620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 36405853 - 36405811
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  36405853 tcataattcattaattatgaacaacatcatgtaacatcatatt 36405811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 36733435 - 36733393
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||| ||||||||||||||||||||||||||||||    
T  36733435 tcataattcatctattatgaacaacatcatgtaacatcatatt 36733393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 22344283 - 22344327
Alignment:
Q  71 ttcataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||    
T  22344283 ttcataattcatcaatcatgaacaacatcatataacatcatattt 22344327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 22355943 - 22355987
Alignment:
Q  71 ttcataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    ||||||| |||||||| |||||||||||||| |||||||||||||    
T  22355943 ttcataattcatcaatcatgaacaacatcatataacatcatattt 22355987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 20517991 - 20517948
Alignment:
Q  71 ttcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||    
T  20517991 ttcataattcatcaatcatgaacaacatcatataacatcatatt 20517948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 23885769 - 23885812
Alignment:
Q  71 ttcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||    
T  23885769 ttcataattcatcaatcatgaacaacatcatataacatcatatt 23885812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 22207426 - 22207464
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatca 110  Q
    |||||| |||||||||||||||||||||| |||||||||    
T  22207426 tcataattcatcaattatgaacaacatcacgtaacatca 22207464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 38988545 - 38988587
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||||||||| |||||||||||||||| |||||||    
T  38988545 tcataattcatcaattataaacaacatcatgtaacctcatatt 38988587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 39019642 - 39019684
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||||||||| |||||||||||||||| |||||||    
T  39019642 tcataattcatcaattataaacaacatcatgtaacctcatatt 39019684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 112
Target Start/End: Complemental strand, 18815556 - 18815523
Alignment:
Q  79 tcatcaattatgaacaacatcatgtaacatcata 112  Q
    ||||||||||||||||||||||| ||||||||||    
T  18815556 tcatcaattatgaacaacatcatataacatcata 18815523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 17438125 - 17438085
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  17438125 ataattcatcaatcatgaacaacatcatataacatcatatt 17438085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 17979157 - 17979117
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  17979157 ataattcatcaatcatgaacaacatcatataacatcatatt 17979117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 18819408 - 18819368
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  18819408 ataattcatcaatcatgaacaacatcatataacatcatatt 18819368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 18833778 - 18833818
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  18833778 ataattcatcaatcatgaacaacatcatataacatcatatt 18833818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 20517925 - 20517885
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  20517925 ataattcatcaatcatgaacaacatcatataacatcatatt 20517885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 21677272 - 21677232
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  21677272 ataattcatcaatcatgaacaacatcatataacatcatatt 21677232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 22207617 - 22207657
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  22207617 ataattcatcaatcatgaacaacatcatataacatcatatt 22207657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 22344349 - 22344389
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  22344349 ataattcatcaatcatgaacaacatcatataacatcatatt 22344389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 22356009 - 22356049
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  22356009 ataattcatcaatcatgaacaacatcatataacatcatatt 22356049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 23669985 - 23670025
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  23669985 ataattcatcaatcatgaacaacatcatataacatcatatt 23670025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 31724235 - 31724195
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  31724235 ataattcatcaataatgaacaacatcatataacatcatatt 31724195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 38988610 - 38988650
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| ||||| |||||||||||||||||||||    
T  38988610 ataattcatcaatcatgaataacatcatgtaacatcatatt 38988650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 39019707 - 39019747
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| ||||| |||||||||||||||||||||    
T  39019707 ataattcatcaatcatgaataacatcatgtaacatcatatt 39019747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 164596 - 164520
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||  ||||||||||||||||||||||||    
T  164596 tatcacaatataacaacatcaaatcatcataaatcagcttcacagatcatcgttaatattataaataatattcataa 164520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 161095 - 161019
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    |||||||||||||||| |||||||||||||||||| | |||||||||||||  ||||||||||||||||||| ||||    
T  161095 tatcacaatataacaatatcaaatcatcataaatcagcttcacagatcatcgttaatattataaataatattgataa 161019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 18456875 - 18456951
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||| |||||||||||||    
T  18456875 tatcacaatataacaacatcaaatcatcataaatcagcttcacagatcatcattaatattatatataatattcataa 18456951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 8227460 - 8227395
Alignment:
Q  12 aacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||    
T  8227460 aacaacatcaaatcatcataaatcagcttcacagatcatcattaatattataattaatattcataa 8227395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 22556392 - 22556432
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  22556392 ataattcatcaattatgaacaacatcatgtaacatcatatt 22556432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 25644493 - 25644550
Alignment:
Q  12 aacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataat 69  Q
    |||||||||||||||||||| ||| | |||||||||||||| |||||| ||| |||||    
T  25644493 aacaacatcaaatcatcatatatcagcttcacagatcatcattaatatcatatataat 25644550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 21680729 - 21680686
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||||| ||||||||||| |||||||||||||||||||| ||||    
T  21680729 tcataattcatcaattataaacaacatcatgtaacatcaaattt 21680686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 35056584 - 35056627
Alignment:
Q  71 ttcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||    
T  35056584 ttcataattcatcaatcatgaacaacatcatataacatcatatt 35056627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 19847955 - 19847925
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcata 31  Q
    |||||||||||||||||||||||||||||||    
T  19847955 tatcacaatataacaacatcaaatcatcata 19847925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 29044445 - 29044487
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| |||||||| |||||||||||||| ||||||||||||    
T  29044445 tcataattcatcaatcatgaacaacatcatataacatcatatt 29044487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 35056766 - 35056807
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||| |||||||| |||||||||||||| |||||||||||||    
T  35056766 ataattcatcaatcatgaacaacatcatataacatcatattt 35056807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 10445398 - 10445438
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  10445398 ataattcatcaatcatgaacaacatcatataacatcatatt 10445438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 13284956 - 13284996
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  13284956 ataattcatcaatcatgaacaacatcatataacatcatatt 13284996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 18584931 - 18584971
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  18584931 ataattcatcaatcatgaacaacatcatataacatcatatt 18584971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 20411397 - 20411357
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  20411397 ataattcatcaatcatgaacaacatcatataacatcatatt 20411357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 29044510 - 29044550
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  29044510 ataattcatcaatcatgaacaacatcatataacatcatatt 29044550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 15367850 - 15367926
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||    
T  15367850 tatcacaatataacaacatcaaatcatcataaatcagcttcacagatcatcattaatattgtaaataatattcataa 15367926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 15370177 - 15370253
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||    
T  15370177 tatcacaatataacaacatcaaatcatcataaatcagcttcacagatcatcattaatattgtaaataatattcataa 15370253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 15371362 - 15371438
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||    
T  15371362 tatcacaatataacaacatcaaatcatcataaatcagcttcacagatcatcattaatattgtaaataatattcataa 15371438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 15373643 - 15373719
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||    
T  15373643 tatcacaatataacaacatcaaatcatcataaatcagcttcacagatcatcattaatattgtaaataatattcataa 15373719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 15402863 - 15402939
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||    
T  15402863 tatcacaatataacaacatcaaatcatcataaatcagcttcacagatcatcattaatattgtaaataatattcataa 15402939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44102370 - 44102446
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||||||| |||||||||| |||||||||||||    
T  44102370 tatcacaatataacatcatcaaatcatcataaatcagcttcacagatcatcattaatattatatataatattcataa 44102446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16223692 - 16223768
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||| ||||||||||||| | |||||||||||||| ||||||  ||||||||||||||||    
T  16223692 tatcacaatataacaacatcacatcatcataaatcagcttcacagatcatcattaatatcgtaaataatattcataa 16223768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 22353993 - 22354065
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattc 73  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||||||| |||||||||| |||||||||    
T  22353993 tatcacaatataacaacaataaatcatcataaatcagtttcacagatcatcattaatattatatataatattc 22354065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 44928885 - 44928808
Alignment:
Q  1 tatcacaatataa-caacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||| |||||| ||||||||||||||| | |||||||||||||| |||||||||| |||||||||||||    
T  44928885 tatcacaatataaacaacataaaatcatcataaatcagcttcacagatcatcattaatattatatataatattcataa 44928808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 21815591 - 21815515
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||| |||||||||||||||||||| |||||||| | |||||| ||||||| |||||||||| | | |||||||||    
T  21815591 tatcataatataacaacatcaaatcaccataaatcagcttcacatatcatcattaatattatatacagtattcataa 21815515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 45315137 - 45315100
Alignment:
Q  77 aatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    ||||||||||||||||||||||||||||||||||||||    
T  45315137 aatcatcaattatgaacaacatcatgtaacatcatatt 45315100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 19566787 - 19566744
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||||| ||||||||||| |||||||||||||||||||||||||    
T  19566787 tcataattcatcaattataaacaacatcatgtaacatcatattt 19566744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 2425425 - 2425382
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||||| ||||||||| | |||||||||||||||||||||||||    
T  2425425 tcataactcatcaattctaaacaacatcatgtaacatcatattt 2425382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 9621666 - 9621709
Alignment:
Q  71 ttcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||    
T  9621666 ttcataattcatcaatcatgaacaacatcatataacatcatatt 9621709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 14507819 - 14507862
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||||| | ||||||||| |||||||||||||||||||||||||    
T  14507819 tcataattaatcaattataaacaacatcatgtaacatcatattt 14507862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 46740330 - 46740373
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||    
T  46740330 tcataattcatcaattataaacaacatcatataacatcatattt 46740373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 12622630 - 12622672
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| |||||||||||||||| ||||||||||| |||||||    
T  12622630 tcataattcatcaattatgaacagcatcatgtaacgtcatatt 12622672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 10272745 - 10272786
Alignment:
Q  71 ttcataaatcatcaattatgaacaacatcatgtaacatcata 112  Q
    ||||||| |||||||| |||||||||||||| ||||||||||    
T  10272745 ttcataattcatcaatgatgaacaacatcatataacatcata 10272786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 13164429 - 13164470
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||| |||||||| |||||||||||||| |||||||||||||    
T  13164429 ataattcatcaatcatgaacaacatcatataacatcatattt 13164470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 55582511 - 55582548
Alignment:
Q  77 aatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  55582511 aatcatcaatcatgaacaacatcatataacatcatatt 55582548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 9923546 - 9923586
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  9923546 ataattcatcaatcatgaacaacatcatataacatcatatt 9923586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 10272811 - 10272851
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  10272811 ataattcatcaatcatgaacaacatcatataacatcatatt 10272851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 11479313 - 11479273
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  11479313 ataattcatcaatcatgaacaacatcatataacatcatatt 11479273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 14508073 - 14508113
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  14508073 ataattcatcaatcatgaacaacatcatataacatcatatt 14508113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 35660157 - 35660197
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  35660157 ataattcatcaataatgaacaacatcatataacatcatatt 35660197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 46740400 - 46740436
Alignment:
Q  79 tcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||||||| |||||||||||||| |||||||||||||    
T  46740400 tcatcaatcatgaacaacatcatataacatcatattt 46740436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 2134 - 2058
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||  ||||||||||||||||||| ||||    
T  2134 tatcacaatataacaacatcaaatcatcataaatcagcttcacagatcatcgttaatattataaataatattgataa 2058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 17976 - 17911
Alignment:
Q  12 aacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||    
T  17976 aacaacatcaaatcatcataaatcagcttcacagatcatcattaatattgtaaataatattcataa 17911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 85585 - 85509
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||  |||||||| |||||||||||||||    
T  85585 tatcacaatataacaacatcaaatcatcataaatcagcttcacagatcatcgttaatattaaaaataatattcataa 85509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44116665 - 44116741
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| ||| |||||||||    
T  44116665 tatcacaatataacaacatcaaatcatcataaatcagtttcacatatcatcattaatattatatatattattcataa 44116741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12756677 - 12756601
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| |  ||||||||||||| |||||||||| | |||||||||||    
T  12756677 tatcacaatataacaacatcaaatcatcataaatcagcatcacagatcatcattaatattatatacaatattcataa 12756601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 17061921 - 17061845
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||| | ||||||||||  ||||||||||||    
T  17061921 tatcacaatataacaacatcaaatcatcataaatcagcttcacagatcattattaatattatatgtaatattcataa 17061845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 38898382 - 38898306
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||| ||||||||| ||||||||||||||||| | ||| |||||||||| ||||||||||||||||||||||||    
T  38898382 tatcacagtataacaacgtcaaatcatcataaatcagcttcgcagatcatcattaatattataaataatattcataa 38898306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 19486693 - 19486628
Alignment:
Q  12 aacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||||| ||| ||||||||||||    
T  19486693 aacaacatcaaatcatcataaatcagcttcacagatcatcattaatattttaattaatattcataa 19486628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 10063772 - 10063707
Alignment:
Q  12 aacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    |||||||||||||||||||||||| | |||||| ||| ||| ||||||| ||||||||||||||||    
T  10063772 aacaacatcaaatcatcataaatcagcttcacatatcttcattaatattgtaaataatattcataa 10063707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 9743938 - 9743895
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||||| ||||||||||| |||||||||||||||||||||||||    
T  9743938 tcataattcatcaattataaacaacatcatgtaacatcatattt 9743895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 15120115 - 15120073
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| |||||||||||||||||||||| |||||||||||||    
T  15120115 tcataattcatcaattatgaacaacatcacgtaacatcatatt 15120073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 30237039 - 30237082
Alignment:
Q  71 ttcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||    
T  30237039 ttcataattcatcaatcatgaacaacatcatataacatcatatt 30237082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 37538516 - 37538557
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||| |||||||| |||||||||||||| |||||||||||||    
T  37538516 ataattcatcaatcatgaacaacatcatataacatcatattt 37538557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 37538670 - 37538711
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||| |||||||| |||||||||||||| |||||||||||||    
T  37538670 ataattcatcaatcatgaacaacatcatataacatcatattt 37538711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 8851904 - 8851864
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  8851904 ataattcatcaatcatgaacaacatcatataacatcatatt 8851864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 38294616 - 38294656
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  38294616 ataattcatcaatcatgaacaacatcatataacatcatatt 38294656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 47976303 - 47976263
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||| ||||||||||| |||||||||||||||||||    
T  47976303 ataattcataaattatgaacagcatcatgtaacatcatatt 47976263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 12119730 - 12119654
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||||||||| ||||||||||||    
T  12119730 tatcacaatataacaacatcaaatcatcataaatcagcttcacagatcttcattaatattataattaatattcataa 12119654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 17248247 - 17248171
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||  |||||||||| |||||||||||||    
T  17248247 tatcacaatataacaacatcaaatcatcataaatcatcttcacagatcatctttaatattatatataatattcataa 17248171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 24340672 - 24340607
Alignment:
Q  12 aacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||    
T  24340672 aacaacatcaaatcatcataaatcagcttcacagatcatcattaatattgtaaataatattcataa 24340607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 17672782 - 17672858
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||| ||||||||||||||||||  | |||||||||| ||| |||||||||| |||||||||||||    
T  17672782 tatcacaatataacatcatcaaatcatcataaataagcttcacagatcttcattaatattatatataatattcataa 17672858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 53070659 - 53070583
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||| ||||||||||||||||||||||||| | |||||| ||||||| |||||||||| | |||||||||||    
T  53070659 tatcacaatctaacaacatcaaatcatcataaatcagcttcacaaatcatcattaatattatatacaatattcataa 53070583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 23274859 - 23274924
Alignment:
Q  12 aacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||| || | |||||||||||||| ||||||||||| ||||||||||||    
T  23274859 aacaacatcaaatcatcataattcagcttcacagatcatcattaatattataattaatattcataa 23274924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 1208803 - 1208761
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  1208803 tcataattcatcaattatgaacaacatcatgtaacatcatatt 1208761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 17207395 - 17207437
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  17207395 tcataattcatcaattatgaacaacatcatgtaacatcatatt 17207437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 37642214 - 37642166
Alignment:
Q  12 aacaacatcaaatcatcataaatcggtttcacagatcatcactaatatt 60  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  37642214 aacaacatcaaatcatcataaatcagcttcacagatcatcattaatatt 37642166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 15565769 - 15565812
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||||| ||||||||||| |||||||||||||||||||||||||    
T  15565769 tcataattcatcaattataaacaacatcatgtaacatcatattt 15565812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 24545843 - 24545886
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||||| ||||||||||| |||||||||||||||||||||||||    
T  24545843 tcataattcatcaattataaacaacatcatgtaacatcatattt 24545886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 11191578 - 11191618
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||||||||||||||||    
T  11191578 ataattcatcaataatgaacaacatcatgtaacatcatatt 11191618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 3528287 - 3528244
Alignment:
Q  71 ttcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||    
T  3528287 ttcataattcatcaatcatgaacaacatcatataacatcatatt 3528244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Original strand, 25201200 - 25201243
Alignment:
Q  71 ttcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||    
T  25201200 ttcataattcatcaatcatgaacaacatcatataacatcatatt 25201243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 17044261 - 17044303
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| |||||||||||||||||| ||| |||||||||||||    
T  17044261 tcataattcatcaattatgaacaacctcacgtaacatcatatt 17044303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 114
Target Start/End: Complemental strand, 53646770 - 53646722
Alignment:
Q  65 ataatattcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||||| |||| ||||||||||||||||| |||| |||||||||||||    
T  53646770 ataatatt-ataattcatcaattatgaacaatatcacgtaacatcatatt 53646722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 3528221 - 3528181
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  3528221 ataattcatcaatcatgaacaacatcatataacatcatatt 3528181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 6806319 - 6806279
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||| ||| |||||||||||||||||||||||||||    
T  6806319 ataattcataaatcatgaacaacatcatgtaacatcatatt 6806279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 12540567 - 12540607
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  12540567 ataattcatcaatcatgaacaacatcatataacatcatatt 12540607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Original strand, 14519582 - 14519618
Alignment:
Q  79 tcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||| |||||||||||||||||| |||||||||||||    
T  14519582 tcattaattatgaacaacatcatataacatcatattt 14519618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 16180383 - 16180343
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  16180383 ataattcatcaataatgaacaacatcatataacatcatatt 16180343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 22147474 - 22147427
Alignment:
Q  12 aacaacatcaaatcatcataaatcggtttcacagatcatcactaatatt 60  Q
    |||||||| ||||||||||||||| | |||||||||||||| |||||||    
T  22147474 aacaacat-aaatcatcataaatcagcttcacagatcatcattaatatt 22147427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 79290 - 79214
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| | ||||| |||||||| |||||||||| | |||||||||||    
T  79290 tatcacaatataacaacatcaaatcatcataaatcagcttcactgatcatcattaatattatatacaatattcataa 79214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 15840 - 15880
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  15840 ataattcatcaatcatgaacaacatcatataacatcatatt 15880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 31061225 - 31061301
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    |||||||||||||||||||||||||| |||||||| | ||| |||||||||  ||||||||||||||||||||||||    
T  31061225 tatcacaatataacaacatcaaatcaccataaatcagcttcgcagatcatcgttaatattataaataatattcataa 31061301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 36154789 - 36154713
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||| ||||||||||||||||||| | |||||| ||||||| ||||| |||| |||||||||||||    
T  36154789 tatcacaatataacatcatcaaatcatcataaatcagcttcacatatcatcattaataatatatataatattcataa 36154713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 11581205 - 11581130
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    |||||||||||||||||||||| ||||||||||||   ||||||||| |||| |||||||||| |||||||||||||    
T  11581205 tatcacaatataacaacatcaa-tcatcataaatcaacttcacagattatcattaatattatatataatattcataa 11581130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 1628302 - 1628260
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  1628302 tcataattcatcaattatgaacaacatcatgtaacatcatatt 1628260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 8834028 - 8833986
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  8834028 tcataattcatcaattatgaacaacatcatgtaacatcatatt 8833986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 14026739 - 14026697
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  14026739 tcataattcatcaattatgaacaacatcatgtaacatcatatt 14026697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 26749246 - 26749288
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  26749246 tcataattcatcaattatgaacaacatcatgtaacatcatatt 26749288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 40726025 - 40726073
Alignment:
Q  12 aacaacatcaaatcatcataaatcggtttcacagatcatcactaatatt 60  Q
    |||||||||||||||||||||||| | |||||||||||||| |||||||    
T  40726025 aacaacatcaaatcatcataaatcagcttcacagatcatcattaatatt 40726073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 660178 - 660220
Alignment:
Q  73 cataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  660178 cataattcatcaattataaacaacatcatgtaacatcatattt 660220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 8504599 - 8504557
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
T  8504599 tcataattcatcaattataaacaacatcatgtaacatcatatt 8504557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 18743793 - 18743835
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  18743793 tcataatttatcaattatgaacaacatcatgtaacatcatatt 18743835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 2154619 - 2154589
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcata 31  Q
    |||||||||||||||||||||||||||||||    
T  2154619 tatcacaatataacaacatcaaatcatcata 2154589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 20902014 - 20901984
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcata 31  Q
    |||||||||||||||||||||||||||||||    
T  20902014 tatcacaatataacaacatcaaatcatcata 20901984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 8833900 - 8833860
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  8833900 ataattcatcaatcatgaacaacatcatataacatcatatt 8833860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 16062863 - 16062903
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  16062863 ataattcatcaatcatgaacaacatcatataacatcatatt 16062903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 21399748 - 21399708
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  21399748 ataattcatcaatcatgaacaacatcatataacatcatatt 21399708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 26749374 - 26749414
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  26749374 ataattcatcaatcatgaacaacatcatataacatcatatt 26749414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 26761688 - 26761728
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||| ||||||||||||||||| |||||||||||||    
T  26761688 ataattcattaattatgaacaacatcacgtaacatcatatt 26761728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 26761751 - 26761791
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  26761751 ataattcatcaatcatgaacaacatcatataacatcatatt 26761791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 21477688 - 21477753
Alignment:
Q  12 aacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    |||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||    
T  21477688 aacaacatcaaatcatcataaatcagcttcacagatcatcattaatattgtaaataatattcataa 21477753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 433166 - 433242
Alignment:
Q  1 tatcacaatataa-caacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcata 76  Q
    ||||||||||||| |||||||||||||||||||||| | || ||||||||||| |||||||||  ||||||||||||    
T  433166 tatcacaatataaacaacatcaaatcatcataaatcagctttacagatcatcattaatattatttataatattcata 433242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 21347118 - 21347194
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||||||||||||||||||| | ||||||   || || ||||||||||| ||||||||||||    
T  21347118 tatcacaatataacaacatcaaatcatcataaatcagcttcacaatacagcattaatattataattaatattcataa 21347194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 77
Target Start/End: Original strand, 21473120 - 21473180
Alignment:
Q  17 catcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||||||||    
T  21473120 catcaaatcatcataaatcagcttcacagatcatcattaatattgtaaataatattcataa 21473180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 21342254 - 21342329
Alignment:
Q  2 atcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    |||||||||||||||||||||||||||||||||| | ||||||   || || ||||||||||| ||||||||||||    
T  21342254 atcacaatataacaacatcaaatcatcataaatcagcttcacaatacagcattaatattataattaatattcataa 21342329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 13212867 - 13212817
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatc 51  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||    
T  13212867 tatcacaatataacaacatcaaatcatcataaatcaacttcacagatcatc 13212817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 50543846 - 50543888
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  50543846 tcataattcatcaattatgaacaacatcatgtaacatcatatt 50543888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 7321719 - 7321680
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcat 111  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  7321719 tcataattcatcaattatgaacaacatcatgtaacatcat 7321680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21707323 - 21707374
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatca 52  Q
    ||||||||||||||| ||||||||||||| ||||| | ||||||||||||||    
T  21707323 tatcacaatataacatcatcaaatcatcagaaatcagattcacagatcatca 21707374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 21711865 - 21711916
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatca 52  Q
    ||||||||||||||| ||||||||||||| ||||| | ||||||||||||||    
T  21711865 tatcacaatataacatcatcaaatcatcagaaatcagattcacagatcatca 21711916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 28477576 - 28477533
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||||| ||||||||||| |||||||||||||||||||||||||    
T  28477576 tcataattcatcaattataaacaacatcatgtaacatcatattt 28477533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 14793292 - 14793250
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||||||||| ||||||||||||||||||||||||    
T  14793292 tcataattcatcaattataaacaacatcatgtaacatcatatt 14793250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 114
Target Start/End: Original strand, 18120732 - 18120767
Alignment:
Q  79 tcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||||||||||||||||||||||||||    
T  18120732 tcataaattatgaacaacatcatgtaacatcatatt 18120767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 111
Target Start/End: Complemental strand, 24720625 - 24720586
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcat 111  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  24720625 tcataattcatcaattataaacaacatcatgtaacatcat 24720586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 23073191 - 23073233
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    ||||||||||||||| || ||||||||||| ||||||||||||    
T  23073191 tcataaatcatcaatcataaacaacatcatataacatcatatt 23073233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 14793817 - 14793780
Alignment:
Q  77 aatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  14793817 aatcatcaatcatgaacaacatcatataacatcatatt 14793780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 7321654 - 7321614
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| ||||||||||||||||||||| |||||    
T  7321654 ataattcatcaatcatgaacaacatcatgtaacattatatt 7321614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 17903822 - 17903786
Alignment:
Q  79 tcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||| |||||||||||||||||| |||||||||||||    
T  17903822 tcattaattatgaacaacatcatataacatcatattt 17903786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 22824151 - 22824111
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  22824151 ataattcatcaatcatgaacaacatcatataacatcatatt 22824111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 34392180 - 34392220
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  34392180 ataactcatcaatcatgaacaacatcatataacatcatatt 34392220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 50544163 - 50544203
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  50544163 ataattcatcaatcatgaacaacatcatataacatcatatt 50544203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0761 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0761
Description:

Target: scaffold0761; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 4453 - 4529
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||| ||||||||||||| ||||| | |||||||||||||| || ||||||| |||||||||||||    
T  4453 tatcacaatataacatcatcaaatcatcagaaatcagcttcacagatcatcaatagtattatatataatattcataa 4529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 16940 - 17016
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||||| ||||||||||||||||||| | |||||||||||||| ||||| |||| |||||| ||||||    
T  16940 tatcacaatataacatcatcaaatcatcataaatcagcttcacagatcatcattaataatatatataatactcataa 17016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 20385 - 20310
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||||||||| ||||||||||||||||||||| | |||||||||||||| ||| |||||| | |||||||||||    
T  20385 tatcacaatataa-aacatcaaatcatcataaatcagcttcacagatcatcattaacattatatacaatattcataa 20310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 19671989 - 19672064
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    ||||||| |||||||||||||| |||||||| ||| | ||||||||| |||| ||||||||||||||||||||||||    
T  19671989 tatcacattataacaacatcaa-tcatcatagatcagcttcacagattatcattaatattataaataatattcataa 19672064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 21336548 - 21336506
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  21336548 tcataattcatcaattatgaacaacatcatgtaacatcatatt 21336506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 25085664 - 25085706
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| |||||||||||||||||||||| |||||||||||||    
T  25085664 tcataattcatcaattatgaacaacatcacgtaacatcatatt 25085706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 14184408 - 14184367
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  14184408 ataattcatcaattatgaacaacatcatataacatcatattt 14184367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 29601495 - 29601528
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaat 34  Q
    ||||||||||||||||||||||||||||||||||    
T  29601495 tatcacaatataacaacatcaaatcatcataaat 29601528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 14184552 - 14184512
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    ||||||||||||  |||||||||||||||||||||||||||    
T  14184552 ataaatcatcaagcatgaacaacatcatgtaacatcatatt 14184512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 21368308 - 21368348
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  21368308 ataattcatcaattatgaacaacatcatataacatcatatt 21368348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 28346053 - 28346010
Alignment:
Q  71 ttcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||    
T  28346053 ttcataattcatcaatcatgaacaacatcatataacatcatatt 28346010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 21316655 - 21316613
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| | |||||||||||||||||| |||||||||||||||    
T  21316655 tcataattaatcaattatgaacaacattatgtaacatcatatt 21316613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 24529534 - 24529504
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcata 31  Q
    |||||||||||||||||||||||||||||||    
T  24529534 tatcacaatataacaacatcaaatcatcata 24529504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 21316451 - 21316410
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||| |||||||| |||||||||||||| |||||||||||||    
T  21316451 ataattcatcaatcatgaacaacatcatataacatcatattt 21316410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 21336344 - 21336303
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||| |||||||| |||||||||||||| |||||||||||||    
T  21336344 ataattcatcaatcatgaacaacatcatataacatcatattt 21336303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 14184190 - 14184150
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    ||||||||||||  |||||||||||||| ||||||||||||    
T  14184190 ataaatcatcaaccatgaacaacatcatataacatcatatt 14184150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 25140520 - 25140560
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  25140520 ataattcatcaataatgaacaacatcatataacatcatatt 25140560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 25140584 - 25140624
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  25140584 ataattcatcaataatgaacaacatcatataacatcatatt 25140624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 25587494 - 25587454
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  25587494 ataattcatcaatcatgaacaacatcatataacatcatatt 25587454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 28345866 - 28345826
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  28345866 ataattcatcaatcatgaacaacatcatataacatcatatt 28345826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 36735285 - 36735245
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  36735285 ataattcatcaatcatgaacaacatcatataacatcatatt 36735245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0503 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0503
Description:

Target: scaffold0503; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 12089 - 12165
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    |||||||||||||||  |||||||||||||||||| | ||||||||| | || |||||||||| | |||||||||||    
T  12089 tatcacaatataacagtatcaaatcatcataaatcagcttcacagattaacattaatattatatacaatattcataa 12165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 70
Target Start/End: Complemental strand, 15566 - 15507
Alignment:
Q  11 taacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataata 70  Q
    ||||||||||||||||||| ||||| | |||||||||||||| |||||||||| ||||||    
T  15566 taacaacatcaaatcatcacaaatcagcttcacagatcatcattaatattatatataata 15507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 62956 - 62913
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||||| ||||||||||| |||||||||||||||||||||||||    
T  62956 tcataattcatcaattataaacaacatcatgtaacatcatattt 62913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 27542 - 27580
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatca 110  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  27542 tcataattcatcaattatgaacaacatcatgtaacatca 27580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 27607 - 27647
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  27607 ataattcatcaatcatgaacaacatcatataacatcatatt 27647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 61977 - 62019
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  61977 tcataattcattaattatgaacaacatcatgtaacatcatatt 62019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 572 - 620
Alignment:
Q  65 ataatattcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||||| |||| |||||||||||||||||||||| |||||||||||||    
T  572 ataatatt-ataattcatcaattatgaacaacatcacgtaacatcatatt 620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 6078 - 6126
Alignment:
Q  65 ataatattcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||||| |||| |||||||||||||||||||||| |||||||||||||    
T  6078 ataatatt-ataattcatcaattatgaacaacatcacgtaacatcatatt 6126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 36436 - 36391
Alignment:
Q  68 atattcataaatcatcaattatgaacaacatcatgtaacatcatat 113  Q
    |||| ||||| ||||||||||||||||||||||| |||||||||||    
T  36436 atatccataattcatcaattatgaacaacatcatataacatcatat 36391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 36302 - 36262
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  36302 ataattcatcaatcatgaacaacatcatataacatcatatt 36262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 11636 - 11692
Alignment:
Q  12 aacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataa 68  Q
    ||||||||||||||||||| | || | |||||||||||||| |||||||||| ||||    
T  11636 aacaacatcaaatcatcatcactcagcttcacagatcatcattaatattatatataa 11692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0401 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0401
Description:

Target: scaffold0401; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 8141 - 8181
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcata 112  Q
    |||||| ||||||||||| ||||||||||||||||||||||    
T  8141 tcataattcatcaattataaacaacatcatgtaacatcata 8181  T

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Target: scaffold1354 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold1354
Description:

Target: scaffold1354; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 114
Target Start/End: Complemental strand, 505 - 462
Alignment:
Q  71 ttcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    ||||||| |||||||| |||||||||||||| ||||||||||||    
T  505 ttcataattcatcaatcatgaacaacatcatataacatcatatt 462  T

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Target: scaffold1354; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 439 - 399
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  439 ataattcatcaatcatgaacaacatcatataacatcatatt 399  T

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Target: scaffold0213 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 111
Target Start/End: Original strand, 18307 - 18346
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcat 111  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  18307 tcataattcatcaattataaacaacatcatgtaacatcat 18346  T

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Target: scaffold0213; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 18476 - 18516
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  18476 ataattcatcaatcatgaacaacatcatataacatcatatt 18516  T

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Target: scaffold0203 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0203
Description:

Target: scaffold0203; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 115
Target Start/End: Complemental strand, 19036 - 18993
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||||| ||||||||||| |||||||||||| ||||||||||||    
T  19036 tcataattcatcaattataaacaacatcatgcaacatcatattt 18993  T

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Target: scaffold0123 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 16195 - 16238
Alignment:
Q  72 tcataaatcatcaattatgaa-caacatcatgtaacatcatatt 114  Q
    |||||| |||||||||||||| ||||||||||||||||||||||    
T  16195 tcataattcatcaattatgaatcaacatcatgtaacatcatatt 16238  T

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Target: scaffold0149 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 30088 - 30118
Alignment:
Q  1 tatcacaatataacaacatcaaatcatcata 31  Q
    |||||||||||||||||||||||||||||||    
T  30088 tatcacaatataacaacatcaaatcatcata 30118  T

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Target: scaffold0051 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 64836 - 64794
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| |||||||| ||||||||||||| |||||||||||||    
T  64836 tcataattcatcaataatgaacaacatcacgtaacatcatatt 64794  T

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Target: scaffold0051; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 64771 - 64731
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  64771 ataattcatcaatcatgaacaacatcatataacatcatatt 64731  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 66939 - 66897
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||    
T  66939 tcataattcatcaattatgaacaagatcatctaacatcatatt 66897  T

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Target: scaffold1160 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1160
Description:

Target: scaffold1160; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 114
Target Start/End: Original strand, 12 - 49
Alignment:
Q  77 aatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  12 aatcatcaatcatgaacaacatcatataacatcatatt 49  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Original strand, 225578 - 225643
Alignment:
Q  12 aacaacatcaaatcatcataaatcggtttcacagatcatcactaatattataaataatattcataa 77  Q
    |||||||||||||||||||| ||| | ||||||| |||| | |||||| ||| ||||| |||||||    
T  225578 aacaacatcaaatcatcatatatcagcttcacagttcattattaatatcatatataatcttcataa 225643  T

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Target: scaffold1186 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1186
Description:

Target: scaffold1186; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 208 - 248
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  208 ataattcatcaataatgaacaacatcatataacatcatatt 248  T

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Target: scaffold0639 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0639
Description:

Target: scaffold0639; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 7334 - 7294
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  7334 ataattcatcaatcatgaacaacatcatataacatcatatt 7294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0639; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 7397 - 7357
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  7397 ataattcatcaatcatgaacaacatcatataacatcatatt 7357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0628
Description:

Target: scaffold0628; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 4347 - 4311
Alignment:
Q  79 tcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||| |||||||||||||||||| |||||||||||||    
T  4347 tcattaattatgaacaacatcatataacatcatattt 4311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0628; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 8907 - 8871
Alignment:
Q  79 tcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||| |||||||||||||||||| |||||||||||||    
T  8907 tcattaattatgaacaacatcatataacatcatattt 8871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 1928 - 1968
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  1928 ataattcatcaatcatgaacaacatcatataacatcatatt 1968  T

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Target: scaffold0505; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 3948 - 3988
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  3948 ataattcatcaatcatgaacaacatcatataacatcatatt 3988  T

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Target: scaffold0335 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 1054 - 1094
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  1054 ataattcatcaatcatgaacaacatcatataacatcatatt 1094  T

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Target: scaffold0231 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 18566 - 18530
Alignment:
Q  79 tcatcaattatgaacaacatcatgtaacatcatattt 115  Q
    |||| |||||||||||||||||| |||||||||||||    
T  18566 tcattaattatgaacaacatcatataacatcatattt 18530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 7594 - 7554
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  7594 ataattcatcaatcatgaacaacatcatataacatcatatt 7554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 3169 - 3209
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  3169 ataattcatcaatcatgaacaacatcatataacatcatatt 3209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 33833 - 33873
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  33833 ataattcatcaataatgaacaacatcatataacatcatatt 33873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 65734 - 65694
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| ||||| |||||||||||||||||||||    
T  65734 ataattcatcaatcatgaataacatcatgtaacatcatatt 65694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 56298 - 56338
Alignment:
Q  72 tcataaatcatcaattatgaacaacatcatgtaacatcata 112  Q
    |||||| | ||||||||| ||||||||||||||||||||||    
T  56298 tcataattaatcaattataaacaacatcatgtaacatcata 56338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 142794 - 142834
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  142794 ataattcatcaatcatgaacaacatcatataacatcatatt 142834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 40339 - 40379
Alignment:
Q  74 ataaatcatcaattatgaacaacatcatgtaacatcatatt 114  Q
    |||| |||||||| |||||||||||||| ||||||||||||    
T  40339 ataattcatcaataatgaacaacatcatataacatcatatt 40379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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