View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13763_low_68 (Length: 446)
Name: NF13763_low_68
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_68 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 9 - 431
Target Start/End: Original strand, 6716544 - 6716962
Alignment:
| Q |
9 |
ctgctggacattacaatgatagaggacaaagagattaagtatcaaatcaatggatattacaagttgcttgagccttgaggaattaaaggctgaaaatttc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6716544 |
ctgctggacattacaatgatagaggacaaagagattaagcatcaaatcaatggatattacaagttgcttgagccttgaggaattaaaggctgaaaatatc |
6716643 |
T |
|
| Q |
109 |
catgtccctaacgaatttgtagctggcctcatgatcaagaagttgcctgaatcatggaaggattacaaacaacaattgaagtacaagcacaaaaaactac |
208 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6716644 |
catgtcccaaacgagtttgtagctggcctcatgatcaagaagttgcctgaatcatggaaggattacaaacaacaattgaagtacaagcacaaaaaactac |
6716743 |
T |
|
| Q |
209 |
cgccctctgatctgatcacccatacggtgtttttcaaaaacattgaatcccatgtttcagaaacttgagcacaaactaaagatgtctcatattaactaaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6716744 |
cgccctctgatctgatcacccatacggtgtttttcaaaaacattgaatcccatgtttcagaaacttgagcacaaactaaagatgtctcatattaactaaa |
6716843 |
T |
|
| Q |
309 |
ggttggacggtccattgattttccttctagtaaactcaacctggattgagtttttaagaaattgtttgtacaatattgtgnnnnnnnnnnnngctccact |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6716844 |
ggttggacggtccattgattttccttctagtaaactcaacctggattgagtttttaagaaattgtttgtacaatattgt----atatatatagctccact |
6716939 |
T |
|
| Q |
409 |
gttttagaataaagagtgaaatt |
431 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
6716940 |
gttttagaataaagagtgaaatt |
6716962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University