View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_72 (Length: 434)
Name: NF13763_low_72
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_72 |
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Alignment Details
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 14 - 290
Target Start/End: Original strand, 34364970 - 34365240
Alignment:
| Q |
14 |
tactataatggaggattgaaattttgagttttgacattcc-atcatcaaacccttgtctgtctagattaggctcagtgttaactgacctacaagcatttt |
112 |
Q |
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| T |
34364970 |
tactctaatggaagattgaaatattgagttttgacattcccatcatcaaacccctgtctgtctagattaggctcagtgttaactgacctacaagcatttt |
34365069 |
T |
|
| Q |
113 |
gtcatatattcagttattccacaagttgtgtgacacttccctaagaataatatcatccatcataaaataaaaatgaaggtttctgatgacaagagttcta |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |
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| T |
34365070 |
gtcatatattcagttattccacaagttgtgtgacacttccctaagaataatatcatccatcataaaa-aaaaatgaaggtttctgaagacaagagttcta |
34365168 |
T |
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| Q |
213 |
actcaatcagaatctgatggtggaaacgttatccgtgtattgttagtta-aaagagggcattgtcagagtaaattagat |
290 |
Q |
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|||||||||||||||||| |||| || ||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
34365169 |
actcaatcagaatctgattgtgg-------atacgtgtattgttggttagcaagagggcattgtcagagtaaattagat |
34365240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 401
Target Start/End: Original strand, 26215613 - 26215646
Alignment:
| Q |
368 |
aaaactgaggtttgtgaaaagaaacaagcggatc |
401 |
Q |
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| T |
26215613 |
aaaactgaggtttgtgaaaagaaacaagcggatc |
26215646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 412
Target Start/End: Complemental strand, 9471776 - 9471741
Alignment:
| Q |
377 |
gtttgtgaaaagaaacaagcggatccggttcatcga |
412 |
Q |
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| T |
9471776 |
gtttgtgagaagaaacaagcggatccggttcatcga |
9471741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 401
Target Start/End: Complemental strand, 18561033 - 18561000
Alignment:
| Q |
368 |
aaaactgaggtttgtgaaaagaaacaagcggatc |
401 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
18561033 |
aaaactgaggtttgtgaaaagaaacaagcagatc |
18561000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 401
Target Start/End: Original strand, 18386460 - 18386493
Alignment:
| Q |
368 |
aaaactgaggtttgtgaaaagaaacaagcggatc |
401 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
18386460 |
aaaactgaggtttgtgaaaagaaacaagcagatc |
18386493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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