View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_76 (Length: 427)
Name: NF13763_low_76
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_76 |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 413
Target Start/End: Complemental strand, 16976461 - 16976062
Alignment:
| Q |
14 |
cctgtgagaattaagtgaatcaatttgagcctttagatcaacttaaaataaaaggataagaattggagtcaaactttattctgatcaatggataataatg |
113 |
Q |
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| T |
16976461 |
cctgtgagaattaagtgaatcaatttgagcctttagatcaacttaaaataaaaggatgagaattcgagtcaaactttattctgatcaatggataataatg |
16976362 |
T |
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| Q |
114 |
taagagccaccgaaacaaacaatgcacatgagattgattctggagtgggaatcatttcaaatctcaaatatgttgtatatgaaagcatctgtatggataa |
213 |
Q |
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| T |
16976361 |
caagagccaccgaaacaaacaatgcacatgagattgattctggagtgggaatcatttcaaatctcaaatatgttgtatatgaaagcatctgtatggataa |
16976262 |
T |
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| Q |
214 |
taatagaaattattctgatgtggtttttcggcatacttttaacaataataaaattgaaatgaaatgaaaaaacctagacaaatggtttcgtggtgtagca |
313 |
Q |
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| T |
16976261 |
taatagaaattattctgatgtggtttttcggcatacttttaacaataataaaattgaaatgaaatgaaaaaacctagacaaatggtttcgtggtgtagca |
16976162 |
T |
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| Q |
314 |
gacatgagtgttatctataaatcctttttgttttgtttaagaaaccaaacaataattaattagattcctcagtataaaatacaatgcaatctcttaatat |
413 |
Q |
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| T |
16976161 |
gacatgagtgttatctataaatcctttttgttttgtttaagaaaccaaacaataattaattagattcctcagtacaaaattcaatgcaatctcttaatat |
16976062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 208
Target Start/End: Complemental strand, 18669283 - 18669230
Alignment:
| Q |
154 |
tggagtgggaatcatttcaaatctcaaatatgttgtatatgaaagcatctgtatg |
208 |
Q |
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| T |
18669283 |
tggagtgggaa-cattccaaagctcaaatatgttgtatatgaaagcatctttatg |
18669230 |
T |
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