View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_77 (Length: 426)
Name: NF13763_low_77
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_77 |
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| [»] scaffold0028 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 414
Target Start/End: Complemental strand, 23697287 - 23696879
Alignment:
| Q |
6 |
agttctttctctgggatcgtgagtgcaatgaattgcttggaactacagctacggatcttcaaagggccatgactgaggnnnnnnnnnnnnnnnnnnnnna |
105 |
Q |
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| T |
23697287 |
agttctttctctgggatcgtgagtgcaatgaattgcttggaactacagctgcggatcttcaaagggccatgactgaggttttttctttaaacctttttta |
23697188 |
T |
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| Q |
106 |
tagtattgccttcaattatttacatcacatctcttacgcaactattgcatttaggctggtgtcacaaatccattggaatatccaatactgctggaccaat |
205 |
Q |
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| T |
23697187 |
tagtattgccttcaattatttacatcacatcttttatgcaactattgcatttaggctggtgtcacaaatccattggaatatccaatactactggactaat |
23697088 |
T |
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| Q |
206 |
tggaaaaaagaaatgtcgtctgtaaagtgaagtggcagccaacttgggacagttgttcagtgcaagcaatcaaggaggatgaaggtttgattgagaagat |
305 |
Q |
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| T |
23697087 |
tggaaaaaagaaatgtcgtctgtaaagtgaagtggcagccaacttgggacagttgttcagtgcaagcaatcaaggaggatgaaggtttgattgagaagat |
23696988 |
T |
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| Q |
306 |
catagaattgttcccaaagaatgagtttgccttctattataaatcctacctgtcttttgcaacaacatttcacttaagtcatattttaaatatgttctca |
405 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
23696987 |
catataattgttcccaaagaatgagtttgccttctattataaatcctacctttcttttgcaacatcatttcacttaagtcatattttaaatatgttctca |
23696888 |
T |
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| Q |
406 |
acttaatct |
414 |
Q |
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| T |
23696887 |
acttaatct |
23696879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 150 - 330
Target Start/End: Complemental strand, 123362 - 123182
Alignment:
| Q |
150 |
ttgcatttaggctggtgtcacaaatccattggaatatccaatactgctggaccaattggaaaaaagaaatgtcgtctgtaaagtgaagtggcagccaact |
249 |
Q |
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| T |
123362 |
ttgcaattaggctggtgtcacaaatcctttggaatatccaattcatctggaccaattggaaaatagaaagttggtttgtaaagttaagtggcagccatct |
123263 |
T |
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| Q |
250 |
tgggacagttgttcagtgcaagcaatcaaggaggatgaaggtttgattgagaagatcatagaattgttcccaaagaatgag |
330 |
Q |
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| T |
123262 |
tgggacagttgttcagttcaagcagtcaaggaagatgaaggtttgatagaaaagatcaaagaattgttcccaaaaaatgag |
123182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 123494 - 123438
Alignment:
| Q |
15 |
tctgggatcgtgagtgcaatgaattgcttggaactacagctacggatcttcaaaggg |
71 |
Q |
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| T |
123494 |
tctgggatcgtgagtgcaatcaattgcttggaactacagctgctgatctgcaaaggg |
123438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 157 - 330
Target Start/End: Complemental strand, 22078130 - 22077958
Alignment:
| Q |
157 |
taggctggtgtcacaaatccattggaatatccaatactgctggaccaattggaaaaaagaaatgtcgtctgtaaagtgaagtggcagccaacttgggaca |
256 |
Q |
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| T |
22078130 |
taggctggtgtcacaaatcctctggaata-ccaacacacttggaccaattggaaaacagagagtttatttgtaaagttaaatggcagccaacttgggaca |
22078032 |
T |
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| Q |
257 |
gttgttcagtgcaagcaatcaaggaggatgaaggtttgattgagaagatcatagaattgttcccaaagaatgag |
330 |
Q |
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| T |
22078031 |
gctgttcggttcaagcaatcaaggaagatgaaggtttaattgaaaagatcaaagcattgttcccaaaaaatgag |
22077958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 22078272 - 22078206
Alignment:
| Q |
17 |
tgggatcgtgagtgcaatgaattgcttggaactacagctacggatcttcaaagggccatgactgagg |
83 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||| |||||| |
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| T |
22078272 |
tgggatcgtgagtgcaatgaattgcttggaactacagctgctgatcttcaaagggtcatggctgagg |
22078206 |
T |
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