View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_80 (Length: 413)
Name: NF13763_low_80
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_80 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 399
Target Start/End: Complemental strand, 5231748 - 5231358
Alignment:
| Q |
6 |
agcatcacagagttcatacggaaaaagtaagaagacaccactttcaatccatgaggaatagagaatgaaatgtcaaatgtagaatcaccaaaaagatgaa |
105 |
Q |
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| T |
5231748 |
agcaacacaaagttcattcggaaaaagtaagaagacaccactttcaatccatgaggaatatagaatgaaatgtcaaatgtagaatcatcaaaaagatgaa |
5231649 |
T |
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| Q |
106 |
gttgatctttgataagaatctcaagttcattcgagaagagccatactctactcgcactaaatccaattcaaatttaaagttaacgacagaaaaatctttt |
205 |
Q |
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| T |
5231648 |
gttgatctttgataagaatctcaagttcattcgagaagagccatactctactcgcactaaatccaattcaaatttaaagttaacgacagaaaaatctttt |
5231549 |
T |
|
| Q |
206 |
aaacaatactt-nnnnnnnngggagaaacacttctccaatgggattaagtcactgacccatgaagtttggctctcttaagcccctcttaggctcatatat |
304 |
Q |
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||||||||||| |||| |||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| || |
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| T |
5231548 |
aaacaatacttaaaaaaaaagggaaaaacacttctccaatgagattaagtcactaacccatgaagtttggccctcttaagcccctcttaggctc----at |
5231453 |
T |
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| Q |
305 |
atcatccaaccttaacattcaaacgaaggattttaagcgatatcagtgtattataattttttagtaaactaaaaaggattttaagctggtccata |
399 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
5231452 |
atcatccaaccttaacattcaaacgaaggattttaagcgatatcagtgtattatattcttttagtaaactaaaaaggattttaagctggtccata |
5231358 |
T |
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