View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_82 (Length: 411)
Name: NF13763_low_82
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_82 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 123 - 394
Target Start/End: Complemental strand, 42680644 - 42680373
Alignment:
| Q |
123 |
taaaagagaaaggctacatgaccaaatttcaatagagctaaatattttgactctaaattaacttactcaaagttttgtgacgctaaaagagaaagggtgc |
222 |
Q |
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| T |
42680644 |
taaaagagaaaggttacatgaccaaatttcaatagagctaaatattttgactctaaattaactgactcaaagttttgtgacgctaaaagagaaagggtgc |
42680545 |
T |
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| Q |
223 |
tctaaaataannnnnnngagtcaattaataaaagagtatcgaattatgtgactctaaaagtgtaattcaaaaaattagtaaggtgaccaaatttagtaag |
322 |
Q |
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| T |
42680544 |
tctaaaataattttttagagtcaattaataaaagagtatcgaattatgtgactctaaaagtgtaattcaaaaaattagtaaggtgaccaaatttagtaag |
42680445 |
T |
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| Q |
323 |
aaaaattatagattcagttaatttgttagacaattagttagataaggttggcacaataactttcataagcaa |
394 |
Q |
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| T |
42680444 |
aaaaattatagattcagttaatttgttagacaattagttagataaggttggcacaataactttcataagcaa |
42680373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 42680808 - 42680698
Alignment:
| Q |
10 |
ataattctcttgatatgataatgtgaattggtacgtacatactagttcgcgatactttttgcaaattggcttgcacaaattctccactaattcgtggaaa |
109 |
Q |
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| T |
42680808 |
ataattctcttgacatgatac-gtgaattggtacgtacataccagttcacgacactttttgcaaattggtttgcacaaattctccactaattcatggaaa |
42680710 |
T |
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| Q |
110 |
tttgtgaaccgg |
121 |
Q |
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| T |
42680709 |
tttgtgaaccgg |
42680698 |
T |
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