View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13763_low_88 (Length: 401)
Name: NF13763_low_88
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_88 |
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| [»] scaffold0187 (5 HSPs) |
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Alignment Details
Target: scaffold0187 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 109 - 390
Target Start/End: Original strand, 1356 - 1637
Alignment:
| Q |
109 |
tgctggtcagtctatgatgtttcaaaactctgatgtttacctgtccttgtttactttggagggtacatggaacgtgtaattgtgctgtgaagatgaatgt |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1356 |
tgctggtcagtctatgatgtttcaaaactctgatgtttacctgtccttgtttactttggagggtacatggaacgtgtaattgtgctgtgaagatgaatgt |
1455 |
T |
|
| Q |
209 |
atgatgattaatgaagtgatggaagatagttaaaagagagcttaaacaccacagatataaaggtgggtttaatgcataatgtttaagctaaggctactct |
308 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1456 |
atgatgattaatgaagtgatggaagatagttaaaagtgagcttaaacaccacagatataaaggtgggtttaatgcataatgtttaagctaaggctactct |
1555 |
T |
|
| Q |
309 |
attttatttctcactcatccaataatgttctttgtaaaagactatattatatataccagtaatctttctgattttatatatt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1556 |
attttatttctcactcatccaataatgttctttgtaaaagactatattatatataccagtaatctttctgattttatatatt |
1637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 139 - 390
Target Start/End: Original strand, 8577 - 8828
Alignment:
| Q |
139 |
tgatgtttacctgtccttgtttactttggagggtacatggaacgtgtaattgtgctgtgaagatgaatgtatgatgattaatgaagtgatggaagatagt |
238 |
Q |
| |
|
|||||||||| |||| ||||| |||||||||| |||||| ||||||| || | |||||| ||| |||||||||||||||||| ||||||||||||||| |
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| T |
8577 |
tgatgtttacttgtctttgttcactttggaggatacatgtaacgtgttat---gttgtgaaaatggatgtatgatgattaatgaggtgatggaagatagt |
8673 |
T |
|
| Q |
239 |
taaaagagagcttaaacaccacagat--------ataaaggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaa |
330 |
Q |
| |
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|||||||||| || | |||||| ||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8674 |
taaaagagaggttcatcaccaccgatttaaaggtataaaggtgggtctaatgcagaatgtttaagctaaggctactctattttaattctcactcatccaa |
8773 |
T |
|
| Q |
331 |
taatgttctttgtaaaagactatattatatataccagtaatctttctgattttatatatt |
390 |
Q |
| |
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|||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |
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|
| T |
8774 |
taatgttctttgtaaaagac-----tatatataccaataatctttctgattttatgtatt |
8828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 139 - 390
Target Start/End: Original strand, 18905 - 19156
Alignment:
| Q |
139 |
tgatgtttacctgtccttgtttactttggagggtacatggaacgtgtaattgtgctgtgaagatgaatgtatgatgattaatgaagtgatggaagatagt |
238 |
Q |
| |
|
|||||||||| |||| ||||| |||||||||| |||||| ||||||| || | |||||| ||| |||||||||||||||||| ||||||||||||||| |
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| T |
18905 |
tgatgtttacttgtctttgttcactttggaggatacatgtaacgtgttat---gttgtgaaaatggatgtatgatgattaatgaggtgatggaagatagt |
19001 |
T |
|
| Q |
239 |
taaaagagagcttaaacaccacagat--------ataaaggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaa |
330 |
Q |
| |
|
|||||||||| || | |||||| ||| |||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
19002 |
taaaagagaggttcatcaccaccgatttaaaggtataaaggtgggtctaatgcagaatgtttaagctaaggctactctattttaattctcactcatccaa |
19101 |
T |
|
| Q |
331 |
taatgttctttgtaaaagactatattatatataccagtaatctttctgattttatatatt |
390 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| |
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| T |
19102 |
taatgttctttgtaaaagac-----tatatataccaataatctttctgattttatgtatt |
19156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 139 - 384
Target Start/End: Original strand, 29815 - 30060
Alignment:
| Q |
139 |
tgatgtttacctgtccttgtttactttggagggtacatggaacgtgtaattgtgctgtgaagatgaatgtatgatgattaatgaagtgatggaagatagt |
238 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| || ||| ||||||| || | |||||| ||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
29815 |
tgatgtttacctgtctttgttcactttggaggatatatgtaacgtgttat---gttgtgaaaatggatgtatgatgattaatgaggtgatggaagatagt |
29911 |
T |
|
| Q |
239 |
taaaagagagcttaaacaccacagat--------ataaaggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaa |
330 |
Q |
| |
|
||||||||||||||| |||||| ||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
29912 |
taaaagagagcttaatcaccaccgatttaaaggtataaaggtgggactaatgcagaatgtttaagctaaggctacactattttatttctcactcatccaa |
30011 |
T |
|
| Q |
331 |
taatgttctttgtaaaagactatattatatataccagtaatctttctgatttta |
384 |
Q |
| |
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|||||||| ||||||||||| |||||||||| |||||||||||||||||| |
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| T |
30012 |
taatgttccttgtaaaagac-----tatatataccggtaatctttctgatttta |
30060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 1266 - 1312
Alignment:
| Q |
19 |
tgagtaactcactgatttaactttctttctttttaggttccgattcc |
65 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1266 |
tgagtaactcactgatttaactttctttctttttaggttccgattcc |
1312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 1e-60; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 139 - 384
Target Start/End: Complemental strand, 37909262 - 37909017
Alignment:
| Q |
139 |
tgatgtttacctgtccttgtttactttggagggtacatggaacgtgtaattgtgctgtgaagatgaatgtatgatgattaatgaagtgatggaagatagt |
238 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| || ||| ||||||| || | |||||| ||| |||||||||||||||||| ||||||||||||||| |
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| T |
37909262 |
tgatgtttacctgtctttgttcactttggaggatatatgtaacgtgttat---gttgtgaaaatggatgtatgatgattaatgaggtgatggaagatagt |
37909166 |
T |
|
| Q |
239 |
taaaagagagcttaaacaccacagat--------ataaaggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaa |
330 |
Q |
| |
|
||||||||||||||| |||||| ||| ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
37909165 |
taaaagagagcttaatcaccaccgatttaaaggtataaaggtgggactaatgcagaatgtttaagctaaggctacactattttatttctcactcatccaa |
37909066 |
T |
|
| Q |
331 |
taatgttctttgtaaaagactatattatatataccagtaatctttctgatttta |
384 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
37909065 |
taatgttccttgtaaaagact-----atatataccggtaatctttctgatttta |
37909017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 157 - 352
Target Start/End: Complemental strand, 37879980 - 37879780
Alignment:
| Q |
157 |
gtttactttggagggtacatggaacgtgtaattgtgctgtgaagatgaatgtatgatgattaatgaagtgatggaagatagttaaaagagagcttaaaca |
256 |
Q |
| |
|
|||||| |||||||||||||| |||||| || | |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
37879980 |
gtttacattggagggtacatgtaacgtgctat---gttgtgaagatggatgtatgatgattaatgaggtgatggaagatagttaaaagagagcttaagca |
37879884 |
T |
|
| Q |
257 |
ccacagatataa--------aggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaataatgttctttgtaaaag |
348 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||||||||| |
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|
| T |
37879883 |
ccacagatataaaggtataaaggtgggtttaatgcagaatgtttaagctaatgctactctattttatttctcattcattcaagtatgttctttgtaaaag |
37879784 |
T |
|
| Q |
349 |
acta |
352 |
Q |
| |
|
|||| |
|
|
| T |
37879783 |
acta |
37879780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 155 - 385
Target Start/End: Complemental strand, 37866063 - 37865833
Alignment:
| Q |
155 |
ttgtttactttggagggtacatggaacgtgtaattgtgctgtgaagatgaatgtatgatgattaatgaagtgatggaagatagttaaa-agagagcttaa |
253 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| || | |||||| |||||||||||||||||||||| ||||||||||| | | | ||||||||||| |
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|
| T |
37866063 |
ttgtttacattggagggtacattgaacgtgctat---gttgtgaaaatgaatgtatgatgattaatgaggtgatggaagaatggcatagagagagcttaa |
37865967 |
T |
|
| Q |
254 |
acaccacagatataaagg-------tgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaataatgttctttgtaaa |
346 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
37865966 |
acaccacagatataaagtataaagatgggtttaatgcagaatgtctaagctaaggctactctattttaattctcactcatccaataatgttctttgtaaa |
37865867 |
T |
|
| Q |
347 |
agactatattatatataccagtaatctttctgattttat |
385 |
Q |
| |
|
||||| |||||||||| |||||||||||||||||| |
|
|
| T |
37865866 |
agact-----atatataccaataatctttctgattttat |
37865833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 150 - 345
Target Start/End: Complemental strand, 37916443 - 37916240
Alignment:
| Q |
150 |
tgtccttgtttactttggagggtacatggaacgtgtaattgtgctgtgaagatgaatgtatgatgattaatgaagtgatggaagatagttaaaagagagc |
249 |
Q |
| |
|
|||| ||||| |||||||||||||||| ||||||| ||| || |||||||||| ||||||||||||||||| |||||||||||||||| |||| |||| |
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|
| T |
37916443 |
tgtctttgttcactttggagggtacatagaacgtggtattatgttgtgaagatgggtgtatgatgattaatgaggtgatggaagatagttgaaagggagc |
37916344 |
T |
|
| Q |
250 |
ttaaacaccacagatataa--------aggtgggtttaatgcataatgtttaagctaaggctactctattttatttctcactcatccaataatgttcttt |
341 |
Q |
| |
|
||| |||||| ||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||| |||| |||| ||||||| | |
|
|
| T |
37916343 |
ttacacaccattgatataaaggtataaaggtgggtttaatgcagaatgtttaggctaaggctactctattttatttctcattcattcaattatgttctat |
37916244 |
T |
|
| Q |
342 |
gtaa |
345 |
Q |
| |
|
|||| |
|
|
| T |
37916243 |
gtaa |
37916240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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