View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_9 (Length: 792)
Name: NF13763_low_9
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 222 - 488
Target Start/End: Complemental strand, 29448907 - 29448641
Alignment:
| Q |
222 |
aatatttagaacattgcatatgcaacttaattatggatgcgcttaaccacgtggattggcatttggcatgactaatagtaaggtaatatgaaattaaaag |
321 |
Q |
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| T |
29448907 |
aatatttagaacattgcatatgcaacttaattatggatgcgcttaaccacgtggattggcatttggcatgactaatagtaaggtaatatgaaattaaaat |
29448808 |
T |
|
| Q |
322 |
catattaatggatcaacaacttgctcaaatgtttaatggtatccaaagccatctagatcaaatttcatatcacaaacactaatgtgcatatataacaaaa |
421 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29448807 |
catattaatggatcaacaacttgctcaagtgtttaatggtatccaaagtcatctagatcaaatttcatatcacagacactaatgtgcatatataacaaaa |
29448708 |
T |
|
| Q |
422 |
atattcctattttttatgacaatcctaaaacttcatttggcttcattctagatgactcgttttttct |
488 |
Q |
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| T |
29448707 |
atattcatatttctgatgacaatcctaaaacttcatttggcttcatattagatgactcgttttttct |
29448641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 277 - 488
Target Start/End: Original strand, 30259744 - 30259955
Alignment:
| Q |
277 |
ttggcatttggcatgactaatagtaaggtaatatgaaattaaaagcatattaatggatcaacaacttgctcaaatgtttaatggtatccaaagccatcta |
376 |
Q |
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| T |
30259744 |
ttggcatttggcatgactaatagtaaggtaatatgaaattaaaagcatattaatggatcaacaacttgctcaagtgtttaatggtatccaaagccatcta |
30259843 |
T |
|
| Q |
377 |
gatcaaatttcatatcacaaacactaatgtgcatatataacaaaaatattcctattttttatgacaatcctaaaacttcatttggcttcattctagatga |
476 |
Q |
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| T |
30259844 |
gatcaaatttcatatcacaaacactaatgtgcatatataacaaaaatattcatatttctgatgacaatcctaaaacttcatttggcttcatattagatga |
30259943 |
T |
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| Q |
477 |
ctcgttttttct |
488 |
Q |
| |
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|||||||||||| |
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| T |
30259944 |
ctcgttttttct |
30259955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 639 - 777
Target Start/End: Complemental strand, 29448657 - 29448523
Alignment:
| Q |
639 |
gatgactcgttttttcttgttttgtcaaagggtatattccaagattaattaaagaagggaaattgccaaatcacgaggcttctacacaaaaccaaaacaa |
738 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||| | || ||||||| |
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| T |
29448657 |
gatgactcgttttttcttgttttgtcaaagggtatattccaagattaa----agaaaggaaattgccaaattaggaggcttctacactacacaaaaacaa |
29448562 |
T |
|
| Q |
739 |
aatcaaaattgaccaaactaatagcacacacagtataat |
777 |
Q |
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| T |
29448561 |
aatcaaaattgaccaaactaatagcacacacagtataat |
29448523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 639 - 777
Target Start/End: Original strand, 30259939 - 30260073
Alignment:
| Q |
639 |
gatgactcgttttttcttgttttgtcaaagggtatattccaagattaattaaagaagggaaattgccaaatcacgaggcttctacacaaaaccaaaacaa |
738 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||||| | || ||||| | |
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| T |
30259939 |
gatgactcgttttttcttgttttgtcaaagggtatattccaagattaa----agaaaggaaattgccaaattaggaggcttctacactacacaaaaacta |
30260034 |
T |
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| Q |
739 |
aatcaaaattgaccaaactaatagcacacacagtataat |
777 |
Q |
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| T |
30260035 |
aatcaaaattgaccaaactaatagcacacgcagtataat |
30260073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 29448956 - 29448904
Alignment:
| Q |
144 |
gaagatgtcatcggattctttttacgcataaaagtcttccaatatgaataata |
196 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
29448956 |
gaagatgtcatcggattctttttatgcataaaagtcttccgatatgaataata |
29448904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 77
Target Start/End: Complemental strand, 29449444 - 29449411
Alignment:
| Q |
44 |
agactaatttcttttaacaataagaaaacgttac |
77 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
29449444 |
agactaatttcttttaacaataagaaaacgttac |
29449411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 497 - 550
Target Start/End: Complemental strand, 26706665 - 26706612
Alignment:
| Q |
497 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgc |
550 |
Q |
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| T |
26706665 |
cccaccctccagaggagctccttcctttgctgcagtcggatgaattaggaacgc |
26706612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 497 - 549
Target Start/End: Complemental strand, 40736608 - 40736556
Alignment:
| Q |
497 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacg |
549 |
Q |
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|||||||||| || |||||||||||| |||||||| ||||||||||||||||| |
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| T |
40736608 |
cccaccctccagatgggctccttcctttgctgcagtcggatgaattaggaacg |
40736556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 497 - 548
Target Start/End: Original strand, 34249663 - 34249714
Alignment:
| Q |
497 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaac |
548 |
Q |
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|||||||||| || |||||||||||| |||||||| |||||||| ||||||| |
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| T |
34249663 |
cccaccctccagacgggctccttcctttgctgcagtcggatgaactaggaac |
34249714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 550
Target Start/End: Complemental strand, 47158773 - 47158720
Alignment:
| Q |
497 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgc |
550 |
Q |
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|||||||||| || || ||||| ||| |||||||| |||||||||||||||||| |
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| T |
47158773 |
cccaccctccagacggactcctccctttgctgcagtcggatgaattaggaacgc |
47158720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 497 - 550
Target Start/End: Original strand, 9452406 - 9452459
Alignment:
| Q |
497 |
cccaccctcctgaggggctccttcctctgctgcagacggatgaattaggaacgc |
550 |
Q |
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|||||||||| |||||| || ||||| ||||||| |||||||||||||||||| |
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| T |
9452406 |
cccaccctccagaggggttcattcctttgctgcaatcggatgaattaggaacgc |
9452459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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