View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_91 (Length: 393)
Name: NF13763_low_91
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_91 |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 46010888 - 46010521
Alignment:
| Q |
1 |
agctcagtcccactgagagtcctccacatttgaagaatgtgaactnnnnnnntgcttacataatttagttgctttaaattaaatcaatgaatggttatan |
100 |
Q |
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| T |
46010888 |
agctcagtcccactgagagtcctccacatttgaagaatgtgaactaaaaaaatgcttacataatttagttgctttaaat-----caatgaatggttatat |
46010794 |
T |
|
| Q |
101 |
nnnnnnnnattggaactgtcatattttcgtgatcaaacaaactcttatatttattactacatttatttcaaaatatgttttgttttttcacacaaattaa |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46010793 |
tttttt--attggaactgtgatattttcgtgatcaaacaaactcttatatttattactacatttatttcaaaatatgttttgttttttcacacaaattaa |
46010696 |
T |
|
| Q |
201 |
gaatatttatacatgaaaatttacaattttatagtattattcttattcaatattggagtattacaatcatgactagtgatgaggttgtgcaaattgctcg |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46010695 |
gaatatttatacatgaaaaattacaattttatagtattattcttattcaatattggagtattacaatcatgactagtgatgaggttgtgcaaattgctcg |
46010596 |
T |
|
| Q |
301 |
gggcatcacaaattaatgcatttttcattcttgttagcaaaaagattgatagtattaaataaaggtcaggctaact |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46010595 |
gggcatcacaaattaatgcatttttcattcttgttagc-aaaagattgatagtattaaataaaggtcaggctaact |
46010521 |
T |
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