View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_93 (Length: 392)
Name: NF13763_low_93
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_93 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 39683775 - 39684140
Alignment:
| Q |
1 |
tgctagtaggcaaaggaggagaagatatggagaggatttgggtgagcatcaaagtgattcatcatccaaaaattgttgaattcttagaacaatctgctaa |
100 |
Q |
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| T |
39683775 |
tgctagtaagcaaaggaggagaagatatggagaggatttgggtgagcatcaaagtgattcatcatccaaaaattgttgaattcttagaacaatctgctaa |
39683874 |
T |
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| Q |
101 |
agagtatggataccaacaaggtgtgcttagaatcatatgtgatgttgacgacttcaaagacattcttgctaacatctcctaatctttcgacaaaaagaaa |
200 |
Q |
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| T |
39683875 |
agagtatggataccaacaaggtgtgcttagaatcatatgtgatgttgacgactttaaagacattcttgctaacatctcctaatctttcgacaaaaagaaa |
39683974 |
T |
|
| Q |
201 |
aagagttggcacctcaccagatgctttgccttggttgagtaannnnnnnnnnnnnattctttggttttccctatgttcaatatactaagattattttatt |
300 |
Q |
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| T |
39683975 |
aagagttggcacctcaccagatgctttgccttggttgagtaattttttcatttttattctttggttttccctatgttcaatatactaagattactttatt |
39684074 |
T |
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| Q |
301 |
cgaagcactttcagatcgtctcttccaactaatcgaatttgaaaattagttcgttatattcttgga |
366 |
Q |
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| T |
39684075 |
cgaagcactttcagatcgtctcttccaactaatcgaatttgaaaattagttcgttatattgttgga |
39684140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 39689259 - 39689414
Alignment:
| Q |
20 |
agaagatatggagaggatttgggtgagcatcaaagtgattcatcatccaaaaattgttgaattcttagaacaatctgctaaagagtatggataccaacaa |
119 |
Q |
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| T |
39689259 |
agaagatatggagaggatttgggtgagcatcaaagtgattcaccatcccaaaattgttgaattgttggaacaatctgctaaagaatatggataccaacag |
39689358 |
T |
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| Q |
120 |
ggtgtgcttagaatcatatgtgatgttgacgacttcaaagacattcttgctaacat |
175 |
Q |
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|||||||||||||||| | ||||| |||| |||||||| ||||||||||||||| |
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| T |
39689359 |
ggtgtgcttagaatcagacgtgatattgagatcttcaaagtcattcttgctaacat |
39689414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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