View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_94 (Length: 390)
Name: NF13763_low_94
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_94 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 52729319 - 52729063
Alignment:
| Q |
1 |
aagagagatattaaagtttaatatatactcctatgtactactaatatacattaatcttttttaatatacaatgatattgcagggagtagtggcatcagga |
100 |
Q |
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| T |
52729319 |
aagagagatattaaagtttaatatatactcctatgtactactaatatacattaatcttttttaatatacaatgatattgcagggagtagtggcatcagga |
52729220 |
T |
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| Q |
101 |
attgcattcgctgtacagatatggtgcattgatagaggaggtccagttttcgttgcggtgtatcaacctgttcaaactcttgttgttgctattatggctt |
200 |
Q |
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| T |
52729219 |
attgcattcgctgtacagatatggtgcattgatagaggaggtccagttttcgttgcggtgtatcaacctgttcaaactcttgttgttgctattatggctt |
52729120 |
T |
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| Q |
201 |
cccttgctttaggagaagagttctatttgggagggttagtcctagctagctacctta |
257 |
Q |
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| T |
52729119 |
cccttgctttaggagaagagttctatttgggagggttagtcctagctagctacctta |
52729063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 296 - 345
Target Start/End: Complemental strand, 52729024 - 52728975
Alignment:
| Q |
296 |
aatcagttgttcactagtcacctttaatttcatcacatacatatatatat |
345 |
Q |
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| T |
52729024 |
aatcagttgttcaccagtcacctttaatttcatcacatacatacatatat |
52728975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 336 - 375
Target Start/End: Complemental strand, 52728966 - 52728927
Alignment:
| Q |
336 |
atatatatatcgttatctacttttcttcaactcttaataa |
375 |
Q |
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| T |
52728966 |
atatatatatcgttatctacttttcttcaactcttaataa |
52728927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 77 - 244
Target Start/End: Complemental strand, 7368495 - 7368328
Alignment:
| Q |
77 |
ttgcagggagtagtggcatcaggaattgcattcgctgtacagatatggtgcattgatagaggaggtccagttttcgttgcggtgtatcaacctgttcaaa |
176 |
Q |
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||||||||||| |||||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| |
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| T |
7368495 |
ttgcagggagtggtggcatctggaattgcatttgcagtacaaatatggtgcattgatagaggaggtccagtgtttgttgcagtgtatcaacctgttcaaa |
7368396 |
T |
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| Q |
177 |
ctcttgttgttgctattatggcttcccttgctttaggagaagagttctatttgggagggttagtccta |
244 |
Q |
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|| ||||||| || || |||||||| |||||||||||||||||||||| ||||| |||||||||||| |
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| T |
7368395 |
cttttgttgtagccatcatggcttctattgctttaggagaagagttctacttgggcgggttagtccta |
7368328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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