View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13763_low_95 (Length: 390)
Name: NF13763_low_95
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13763_low_95 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Original strand, 6083706 - 6084062
Alignment:
| Q |
19 |
gtttaaaagtccaaaacatttgggatcattgtcatgccaaagttttggaccttcagatataaaccttatggatgatttcattgaaatggaaaagttagca |
118 |
Q |
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| T |
6083706 |
gtttaaaagtccaaaacatttgggatcattgtcatgcaaaagttttggaccttcagatataaaccttatggatgatttcattgaaatggaaaagttagca |
6083805 |
T |
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| Q |
119 |
gtggtttctgtcgaaaaagccactgaaatttctcatgcttctgtagaagtaaataatgaaataattggcttctcagagactatactagatgagatcagtc |
218 |
Q |
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| T |
6083806 |
gtggtttctgtcgaaaaagccactgaaatttctcatgcttctgtagaagcaaataatgaaataattggcttctcagagactatactagatgagatcagtc |
6083905 |
T |
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| Q |
219 |
cattgtctgattctgatcatatctcggaattcgctgcatcgaatccggaaacatgttccaatgacatatttaagggtaatattcctggttggtttcagga |
318 |
Q |
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| T |
6083906 |
cattgtctgattctgatcatatctcggaattcgctgcatcgaatccggaaacatgttccagtgacatatttaagggtaatattcctggttggtttcagga |
6084005 |
T |
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| Q |
319 |
tgtagttagagtggtgttggaacaaaattgtgttactgattttaaccctgatgatgt |
375 |
Q |
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| T |
6084006 |
tgtagttagagtggtgttggaacaaaattgtgttactgattttaaccctgatgatgt |
6084062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 39107305 - 39107208
Alignment:
| Q |
63 |
ttggaccttcagatataaaccttatggatgatttcattgaaatggaaaagttagcagtggtttctgtcgaaaaagccactgaaatttctcatgcttct |
160 |
Q |
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| T |
39107305 |
ttggagcttcagacataaatctcatggatgactttgtcgaaatggaaaaattagcagtggtctctgttgaaaaagaccctgaaatctctggtgcttct |
39107208 |
T |
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