View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13763_low_97 (Length: 384)

Name: NF13763_low_97
Description: NF13763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13763_low_97
NF13763_low_97
[»] chr2 (2 HSPs)
chr2 (11-369)||(1078499-1078853)
chr2 (71-245)||(5602506-5602679)
[»] chr3 (3 HSPs)
chr3 (11-316)||(54766136-54766441)
chr3 (283-369)||(54766442-54766528)
chr3 (265-353)||(47482612-47482701)
[»] scaffold0206 (1 HSPs)
scaffold0206 (148-369)||(10069-10288)
[»] chr7 (1 HSPs)
chr7 (307-367)||(19828056-19828116)
[»] chr6 (3 HSPs)
chr6 (307-369)||(13044690-13044752)
chr6 (307-369)||(13060711-13060773)
chr6 (139-181)||(13044394-13044436)
[»] chr8 (1 HSPs)
chr8 (260-353)||(37745516-37745610)
[»] chr4 (1 HSPs)
chr4 (260-345)||(54962894-54962980)


Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 11 - 369
Target Start/End: Original strand, 1078499 - 1078853
Alignment:
Q  11 taattctacgtggagacaatagagaaaatcagattttgaacatcattatcaataatgattgcaaactaactacacaaattggacctaagtgnnnnnnntt 110  Q
    |||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||       ||    
T  1078499 taattctatgtggagacaatagagaaaaccaaattttgaacatcat-atcaataatgattgcaaactaaatacacaaattggacctaagtgaaaaaaatt 1078597  T
Q  111 cgcccgaaccaatgaatttcaaccaagatgcattgtcaaatttaaattgtcgatcaataattattatatttatcatgtatttcgtctaaaataggactat 210  Q
    |||||||||||||||||||||||||   |||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||    
T  1078598 cgcccgaaccaatgaatttcaacca---tgcactgtcaaatttaaattgtcgatcaataattgttatgtttataatgtatttcgtctaaaataggactat 1078694  T
Q  211 gtgaattattttatattagtatatttatgactattataattgaagtaatgtgttttctacttattcccaaaagtatatattatgtaatcaatacaattta 310  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||||||||||| ||||||||||||||||    
T  1078695 gtgaattattttatattagtatatttatgactattataattgaaattatgtgatttctacttattcccagaagtatatattatataatcaatacaattta 1078794  T
Q  311 gtttattatagcatcaaacatgtaatacacaaataattggacaacacatataaattatt 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1078795 gtttattatagcatcaaacatgtaatacacaaataattggacaacacataaaaattatt 1078853  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 71 - 245
Target Start/End: Original strand, 5602506 - 5602679
Alignment:
Q  71 gcaaactaactacacaaattggacctaagtgnnnnnnnttcgcccgaaccaatgaatttcaaccaagatgcattgtcaaatttaaattgtcgatcaataa 170  Q
    ||||| ||||||||||||||||||| |||||       ||| ||| || ||||||||| | ||||||||||| | |   |||||| || || || |||||    
T  5602506 gcaaattaactacacaaattggaccaaagtggaataacttctcccaaatcaatgaattccgaccaagatgcactatgtgatttaattt-tctattaataa 5602604  T
Q  171 ttattatatttatcatgtatttcgtctaaaataggactatgtgaattattttatattagtatatttatgactatt 245  Q
    || |||| ||| ||||||||||||| |||||||||||||| |||  | |||| |||||||||||||| |||||||    
T  5602605 ttgttatgtttgtcatgtatttcgtataaaataggactatatgagctgttttctattagtatatttacgactatt 5602679  T

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Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 316
Target Start/End: Original strand, 54766136 - 54766441
Alignment:
Q  11 taattctacgtggagacaatagagaaaatcagattttgaacatcattatcaataatgattgcaaactaactacacaaattggacctaagtgnnnnnnntt 110  Q
    |||||||||||||||||||||||||||| || ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||    
T  54766136 taattctacgtggagacaatagagaaaaccaaattttaaacatcattatcaataataattgcaaactaactacacaaattggacctaagtgaaaaaaatt 54766235  T
Q  111 cgcccgaaccaatgaatttcaaccaagatgcattgtcaaatttaaattgtcgatcaataattattatatttatcatgtatttcgtctaaaataggactat 210  Q
    ||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  54766236 cgcccgaaccaatgaatttcaaccagggtgcactgtcaaatttaaattgtcgatcaataattgttatgtttatcatgtatttcgtctaaaataggactat 54766335  T
Q  211 gtgaattattttatattagtatatttatgactattataattgaagtaatgtgttttctacttattcccaaaagtatatattatgtaatcaatacaattta 310  Q
    |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  54766336 gtgaattattttatattagtatatttatgactattataattgaaattatgtgttttctacttattcccaggagtatatattatataatcaatacaattta 54766435  T
Q  311 gtttat 316  Q
    ||||||    
T  54766436 gtttat 54766441  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 283 - 369
Target Start/End: Original strand, 54766442 - 54766528
Alignment:
Q  283 gtatatattatgtaatcaatacaatttagtttattatagcatcaaacatgtaatacacaaataattggacaacacatataaattatt 369  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  54766442 gtatatattatataatcaatacaatttagtttattatagcatcaaacatgtaatacacaaataattggataacacatataaattatt 54766528  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 353
Target Start/End: Original strand, 47482612 - 47482701
Alignment:
Q  265 ttctacttattcccaaaagtatatattatgtaatcaatacaattt-agtttattatagcatcaaacatgtaatacacaaataattggaca 353  Q
    ||||||| ||||  |||||| || ||||  |||||||| |||||| | |||||| || |||||||||| |||||||||||||||| ||||    
T  47482612 ttctactaattcaaaaaagtttaaattacctaatcaatgcaattttactttattctaccatcaaacatataatacacaaataatttgaca 47482701  T

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Target: scaffold0206 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: scaffold0206
Description:

Target: scaffold0206; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 148 - 369
Target Start/End: Complemental strand, 10288 - 10069
Alignment:
Q  148 aaatttaaattgtcgatcaataattattatatttatcatgtatttcgtctaaaataggactatgtgaattattttatattagtatatttatgactattat 247  Q
    ||||||||||| |||||| |||||| |||| ||| |||| ||||||||||||||| | ||||||||||| |||||||  |||| ||||||||||||||||    
T  10288 aaatttaaattttcgatcgataattgttatgtttgtcatatatttcgtctaaaattgaactatgtgaatcattttat--tagtctatttatgactattat 10191  T
Q  248 aattgaagtaatgtgttttctacttattcccaaaagtatatattatgtaatcaatacaatttagtttattatagcatcaaacatgtaatacacaaataat 347  Q
    |||||||    |||||||||||||||||||||||| |||| ||||| |||| ||| |||||||||||||||| ||||||||||| |||||||||||||||    
T  10190 aattgaaaccttgtgttttctacttattcccaaaattataaattatataataaatgcaatttagtttattattgcatcaaacatataatacacaaataat 10091  T
Q  348 tggacaacacatataaattatt 369  Q
    | |||||||| |||||||||||    
T  10090 tcgacaacacgtataaattatt 10069  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 367
Target Start/End: Complemental strand, 19828116 - 19828056
Alignment:
Q  307 tttagtttattatagcatcaaacatgtaatacacaaataattggacaacacatataaatta 367  Q
    |||| |||||||||||||||||||| ||||||||||||||||  | |||||||| ||||||    
T  19828116 tttactttattatagcatcaaacatataatacacaaataatttaaaaacacatacaaatta 19828056  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 369
Target Start/End: Original strand, 13044690 - 13044752
Alignment:
Q  307 tttagtttattatagcatcaaacatgtaatacacaaataattggacaacacatataaattatt 369  Q
    |||| |||||||||||||||||||| ||||||||||||||||  | ||||||||  |||||||    
T  13044690 tttactttattatagcatcaaacatataatacacaaataatttaaaaacacatacgaattatt 13044752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 369
Target Start/End: Original strand, 13060711 - 13060773
Alignment:
Q  307 tttagtttattatagcatcaaacatgtaatacacaaataattggacaacacatataaattatt 369  Q
    |||| |||||||||||| ||||||| ||||||||||||||||  | |||||||| ||||||||    
T  13060711 tttactttattatagcaccaaacatataatacacaaataatttaaaaacacatacaaattatt 13060773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 181
Target Start/End: Original strand, 13044394 - 13044436
Alignment:
Q  139 tgcattgtcaaatttaaattgtcgatcaataattattatattt 181  Q
    |||||||||||||||||||| ||||||||||||  ||||||||    
T  13044394 tgcattgtcaaatttaaattttcgatcaataatggttatattt 13044436  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 353
Target Start/End: Original strand, 37745516 - 37745610
Alignment:
Q  260 gtgttttctacttattcccaaaagtatatattatgtaatcaatacaattt-agtttattatagcatcaaacatgtaatacacaaataattggaca 353  Q
    |||| ||||||| ||||  |||||| || ||||  |||||||| |||||| | |||||| || |||||||||| |||||||||||||||| ||||    
T  37745516 gtgtcttctactaattcaaaaaagtttaaattacctaatcaatgcaattttactttattctaccatcaaacatataatacacaaataattcgaca 37745610  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 345
Target Start/End: Original strand, 54962894 - 54962980
Alignment:
Q  260 gtgttttctacttattcccaaaagtatatattatgtaatcaatacaa-tttagtttattatagcatcaaacatgtaatacacaaata 345  Q
    ||||||||||| ||||| || ||||||| ||||| |||| | | ||| |||| ||||||||| |||||||||| ||||||| |||||    
T  54962894 gtgttttctacatattcacagaagtataaattatataattagtgcaattttactttattataacatcaaacatataatacataaata 54962980  T

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