View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13764_high_10 (Length: 566)
Name: NF13764_high_10
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_high_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 197 - 548
Target Start/End: Complemental strand, 37855920 - 37855560
Alignment:
| Q |
197 |
agtgtataaacaactttatttgtttgttttcgattaaactcaacacaacaatatataaattgagaagcaaaattacatttacagtttaataaaacataac |
296 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37855920 |
agtgtatgaacaactttatttgtttgttttcgactaaactcaacacaacaatatataaattgagaagcaaaactacatttacagtttaataaaacataac |
37855821 |
T |
|
| Q |
297 |
caaattttgtaacatc---------tttgttgaatgttttcacccttgtttttgtttttgaatcatgaaagaaatcaatattatcaaagtgtagatcatt |
387 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37855820 |
caaattttgtaacatcctttctgtctttgttgaatgttttcacccttgtttttgtttttgaatcatgaaagaaatcaatattatcaaagtgtagatcatt |
37855721 |
T |
|
| Q |
388 |
aatccaattgatagcatgaagaagatcgagagcttcaccggaatcaaaattacacacagtgatactacatgatttttgcaagcacaaaaacacattcacc |
487 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37855720 |
aatccaattaatagcatgaagaagatcgagagcttcaccggaatcaaaattatacacagtgatactacatgatttttgcaagcacaaaaacacattcacc |
37855621 |
T |
|
| Q |
488 |
ggcccatgccaatacctgtccgattttgttctaaagaaacgaagcatctatattgcatttg |
548 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| |||| ||||||||||||||||||||| |
|
|
| T |
37855620 |
ggcccgtgccaatacctgtctgattttgttctaacgaaatgaagcatctatattgcatttg |
37855560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 37856069 - 37855907
Alignment:
| Q |
13 |
aatatatagcgacgaaaaagtatcctagcataccacaannnnnnnnn-attaaggaagaatgcttatataattttcattaataagcaaatgagtcgtaca |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37856069 |
aatatatagcgacgaaaaagtatcctagcataccacaattttttatttattaaggaagaatgcttatataattttcattaataagcaaatgagtcgtaca |
37855970 |
T |
|
| Q |
112 |
tgtggtgaatcaatgatatgagttggctaaaaatgtggctattcttgatagtgtataaacaac |
174 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37855969 |
tgtggtgaatcaatgatataagttggctaaaaatgtggctattcttgatagtgtatgaacaac |
37855907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 214 - 294
Target Start/End: Complemental strand, 35316475 - 35316395
Alignment:
| Q |
214 |
atttgtttgttttcgattaaactcaacacaacaatatataaattgagaagcaaaattacatttacagtttaataaaacata |
294 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| | | |||||| | |||| ||||| |||||||||| | ||| |||||||| |
|
|
| T |
35316475 |
atttgtttgtcttcgaccaaactcaacacaagagtttataaactaagaaacaaaactacatttacaatctaaaaaaacata |
35316395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University