View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_high_14 (Length: 494)
Name: NF13764_high_14
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 2 - 475
Target Start/End: Original strand, 55127527 - 55127987
Alignment:
| Q |
2 |
aaaaaatctttagcaagttttctataagaattacaaaataatatataattgaggttcatcacatatcgtttaataatgtatgtatgtaaatcagacgcga |
101 |
Q |
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| T |
55127527 |
aaaaaatctttagcaagttttctataagaattacaaaataata----attgaggttcatcacatatcgtttaataatgt----atgtaaatcagacgcga |
55127618 |
T |
|
| Q |
102 |
tttccacgaaaaaaggacaaagacgaaccacctttttctgtcataaattatgtttctgtcggagcaaaagcaaattagcaaagcaatgaagaatggaaag |
201 |
Q |
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| T |
55127619 |
tttccaagaaaaaaggacaaagacgaaccacctttttctgtcataaattatgtttctgtcggagcaaaagcaaattagcaaagcaatgaagaatggaaag |
55127718 |
T |
|
| Q |
202 |
ttaagataacgacaaacaactaaagaaacatagtttcattctttgaacgcttttttgttgtttaagaattgatccatgaagatgtttcccacatgatgtg |
301 |
Q |
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| T |
55127719 |
ttaagataacgacaaacaactaaagaaacatagtttcattctttgaacgcttttttgttgtttaagaattgatccatgaagatgtttcccacatgatgtg |
55127818 |
T |
|
| Q |
302 |
attctcttttctcaaagcaacaaattatagttaagtccttccttgtataaaacgtggattaatatgaatatctacgtgctcatgaatggaattaaagtat |
401 |
Q |
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| T |
55127819 |
attctcttttctcaaagcaacaaattgtagttaagtccttccttgtataaaacgtggattaatatgaatatctacgtgctcatgaatggaattaaagtat |
55127918 |
T |
|
| Q |
402 |
ctggatagtttaattcgcagtactgtattgatttccttgtatgaacaatatatattttttgatgaacacaattc |
475 |
Q |
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| T |
55127919 |
ctggatagtttaattcgcagtactgtattgattt-cttgtatgaaca----atattttttgatgaacacaattc |
55127987 |
T |
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