View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_high_17 (Length: 443)
Name: NF13764_high_17
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Original strand, 13646380 - 13646786
Alignment:
| Q |
19 |
acaaggccatgtaaattcaatgctaaagctagctgaacttcttgcaattcaaaacatttacataactttcctcaacactgaatacatccataaccgactc |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| |
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| T |
13646380 |
acaaggccatgtaaattcaatgctaaagctagctgaacttcttgcaattcaaaacatctacatcactttcctcaacaccaaatacatccataaccgactc |
13646479 |
T |
|
| Q |
119 |
atacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaattcaagactatctctgattttcatagtgaagagaagcatcctggat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13646480 |
atacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaattcaagactatctctgattttcatagtgaagagaagcatcctggat |
13646579 |
T |
|
| Q |
219 |
ttggagaaaggataggtgatgtaattacgtcactcagtttgtatggtaagtcttttttgagagatattattgtgtctgagaaaataagttgcattatttt |
318 |
Q |
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| T |
13646580 |
ttggagaaaggataggtgatgtaattacgtcactgagtttgtatggtaagcctttgttgaaagatataattgtctccgagaaaataagttgcattatttt |
13646679 |
T |
|
| Q |
319 |
ggatggaatatttggtgatcttgctactgatttggctgctgagtttggaatacaattgattcattttcgtactattagttcttgttgcttttgggcttat |
418 |
Q |
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| T |
13646680 |
ggatggaatatttggtgatcttgctactgatttggctgctgagtttggaatacaattgattcattttcgtactattagttcttgttgcttttgggcttat |
13646779 |
T |
|
| Q |
419 |
ttctgtg |
425 |
Q |
| |
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||||||| |
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| T |
13646780 |
ttctgtg |
13646786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 420
Target Start/End: Original strand, 13656706 - 13657107
Alignment:
| Q |
19 |
acaaggccatgtaaattcaatgctaaagctagctgaacttcttgcaattcaaaacatttacataactttcctcaacactgaatacatccataaccgactc |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| |
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| T |
13656706 |
acaaggccatgtaaatccaatgctaaagctagctgaacttcttgcaattcaaaacatctacatcacttttctcaacaccaaatacatccataaccgactc |
13656805 |
T |
|
| Q |
119 |
atacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaattcaagactatctctgattttcatagtgaagagaagcatcctggat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||| |||||||||| |
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| T |
13656806 |
atacaattcaatgatgatattcaagctcttttagaatgttaccctaagcttcaattcaagaccatctctgattttcacagtgaggagaaacatcctggat |
13656905 |
T |
|
| Q |
219 |
ttggagaaaggataggtgatgtaattacgtcactcagtttgtatggtaagtcttttttgagagatattattgtgtctgagaaaataagttgcattatttt |
318 |
Q |
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||||||||| | |||||||||||||| |||||| ||||||||||||||| |||| |||| |||||| ||||| || ||||||||||||||||||||||| |
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| T |
13656906 |
ttggagaaaaggtaggtgatgtaattttgtcactgagtttgtatggtaagcctttgttgaaagatataattgtctccgagaaaataagttgcattatttt |
13657005 |
T |
|
| Q |
319 |
ggatggaatatttggtgatcttgctactgatttggctgctgagtttggaatacaattgattcattttcgtactattagttcttgttgcttttgggcttat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13657006 |
ggatggaatatttggtgatcttgctactgatttggctgctgagtttgggatacaattgattcattttcgtactattagtgcttgttgcttttgggcttat |
13657105 |
T |
|
| Q |
419 |
tt |
420 |
Q |
| |
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|| |
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|
| T |
13657106 |
tt |
13657107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 13651458 - 13651833
Alignment:
| Q |
19 |
acaaggccatgtaaattcaatgctaaagctagctgaacttcttgcaattcaaaacatttacataactttcctcaacactgaatacatccataaccgactc |
118 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||| ||||||||| || ||||||| ||||| ||||||||||||||||| ||| ||||| |
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| T |
13651458 |
acaaggccatgtaaacacaatgctcaagctagctgaacttcttttaattcaaaatcttcacataacattcctaaacactgaatacatccacaacagactc |
13651557 |
T |
|
| Q |
119 |
atacaattcaat---gatgatattcaagctcttttagaatgttaccctaagcttcaattcaagactatctctgattttcatagtgaagagaagcatcctg |
215 |
Q |
| |
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|| || ||| |||||| || || | ||| | |||||||||||||||||||||||||||| |||||||||||||| | | | ||||||||||||| |
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| T |
13651558 |
attagtttgaatattgatgatgttaaatcaatttcacaatgttaccctaagcttcaattcaagaccatctctgattttcaaaataaggagaagcatcctg |
13651657 |
T |
|
| Q |
216 |
gatttggagaaaggataggtgatgtaattacgtcactcagtttgtatggtaagtcttttttgagagatattattgtgtctgagaaaataagttgcattat |
315 |
Q |
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| T |
13651658 |
gatttggagaaaacattgtagatgtaatttcctccataaatatgtatggtaagccttctttgagagacattattgtctctgagaaaataagttgcattat |
13651757 |
T |
|
| Q |
316 |
tttggatggaatatttggtgatcttgctactgatttggctgctgagtttggaatacaattgattcattttcgtact |
391 |
Q |
| |
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||| |||||| |||||||| ||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||| |
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| T |
13651758 |
tttagatggaggttttggtgaccttgctactgatttggctgctgaatttgggatacagttgatacattttcgtact |
13651833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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