View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_high_18 (Length: 439)
Name: NF13764_high_18
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 190 - 425
Target Start/End: Complemental strand, 47328905 - 47328667
Alignment:
| Q |
190 |
cttccttcattgagttcaccgggttgtagaggtaccaactcgattttaacttgatctttcacttaaatgtgagtattggcatgactgtc--ataaggcat |
287 |
Q |
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| T |
47328905 |
cttccttcattgagttcaccgggttgtagaggtaccaactcgattttaacttgatctttcacttaaatgtgagtattcgcatgactgtcgtataaggcat |
47328806 |
T |
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| Q |
288 |
ggagatcatattgccaaggtctt-ccnnnnnnnnggtggcaaacatccataagagtaacatcacaccaaactttgcgatcatagagatcatgtagctttt |
386 |
Q |
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| T |
47328805 |
ggagatcatattgccaaggtcttacaaaaaaaaaggtggcaaacatccataagagtaacatcacaccaaactttgcgatcatagagatcatatagctttt |
47328706 |
T |
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| Q |
387 |
gtcgatggaaaagatacaagccaattttgagatactatt |
425 |
Q |
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| T |
47328705 |
gtcgatggaaaagatacaagccaattttgagatactatt |
47328667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 8 - 168
Target Start/End: Complemental strand, 47329095 - 47328935
Alignment:
| Q |
8 |
atgaaattgacccaatagatatcagttttaattagtttgcctctttgaattacttctgttgccgaatccaaagtaattctagggcaaaatccataccaac |
107 |
Q |
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| T |
47329095 |
atgaaattgacccaatagatatcagttttaattagtttgcctctttgaattacttctgttgccgaatccaaagtaattctagggcaaaatccataccaac |
47328996 |
T |
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| Q |
108 |
attttcccagtagcttcacatggcataaataactttgttgactataagttctaatgacttg |
168 |
Q |
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| T |
47328995 |
attttcccagtagcttcacatggcatatataactttgttgactataagttctagtgacttg |
47328935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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