View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_high_21 (Length: 381)
Name: NF13764_high_21
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 357
Target Start/End: Original strand, 28468240 - 28468579
Alignment:
| Q |
19 |
gtatagagtgtagaccccttccacatggaaagtgaaacttctctttcctcaccctctcaactcaaagcaattcaatttattcaaaacatgtagtaataat |
118 |
Q |
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| T |
28468240 |
gtatagagtgtagaccccttccacatggaaagtgaaacttctctttcctcaccctctcaactcaaagcaattcaatttattcaaaacatgtagtaataat |
28468339 |
T |
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| Q |
119 |
tgtgagaaggnnnnnnnn-tgagacatggtaggggccaatgatacctaccaaaattcaattggaaaagagaatgaaattaatttaagaataattgggttt |
217 |
Q |
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| T |
28468340 |
tgtgagaaggaaaaaaaaatgagacatggtaggggccaatgatacctaccaaaattcaattggaaaagagaatgaaattaatttaagaataattgggttt |
28468439 |
T |
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| Q |
218 |
ccannnnnnngttaaggaagatcaaatatacctctttctatgtgttgcattgtctatttctataaaattaaactcttacttctacttctgtgaaacaagc |
317 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28468440 |
ccatttttttgttaaggaagatcaaatatacctctttctatgtgttgcattgtctatttctataaaattaaactcttacttctacttctgtgaaacaagc |
28468539 |
T |
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| Q |
318 |
catttatatcagtcccactttctttgtatattgcattgaa |
357 |
Q |
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| T |
28468540 |
catttatatcagtcacactttctttgtatattgcattgaa |
28468579 |
T |
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