View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13764_high_23 (Length: 375)
Name: NF13764_high_23
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 49 - 360
Target Start/End: Complemental strand, 31368360 - 31368041
Alignment:
| Q |
49 |
aaggatattgcgcattat--taatgattacttctgtgcactaatctaatgatgcatgatataatnnnnnnnta------cattcgcgcacactcatgtac |
140 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
31368360 |
aaggatattgcgcattatattaatgattacttctgtgcactaatctaatgatgcatgatataataaaaaactaaaaacacattcgcgcacactcatgtat |
31368261 |
T |
|
| Q |
141 |
tcatggtttaattttgatacactttaagttnnnnnnnttaatcacaaccatcgtatatattactttagttttaattaaaatcaaatttttaacgatccaa |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31368260 |
tcatggtttaattttgatacactttaagttaaaaaaattaatcacaaccatcgtatatattactttagttttaattaaaatcaaatttttaacgatccaa |
31368161 |
T |
|
| Q |
241 |
tgactataattaattgattgtgttaaaaatctttacttacataccaattaaatatccatataaggttaattaagtttttgagaataatggtcaataatga |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31368160 |
tgactataattaattgattgtgttaaaaatctttacttacataccaattaaatatccatataaggttaattaagtttttgagaataatggtcaataatga |
31368061 |
T |
|
| Q |
341 |
tatgtcatggggcaacaaat |
360 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
31368060 |
tatgtcatggggcaacaaat |
31368041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 265 - 335
Target Start/End: Original strand, 23828436 - 23828504
Alignment:
| Q |
265 |
aaaaatctttacttacataccaattaaatatccatataaggttaattaagtttttgagaataatggtcaat |
335 |
Q |
| |
|
|||| |||| |||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
23828436 |
aaaattcttgacttgcataccaattaaat--ccatataagtttaattaagtttttgagaataatggtcaat |
23828504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University