View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_high_25 (Length: 356)
Name: NF13764_high_25
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 344
Target Start/End: Original strand, 38852821 - 38853149
Alignment:
| Q |
17 |
cagtcaacacctctgcctccctgcctgcacatattcaacaatgtttgccttttaaaattgcagtcctcatcactcatgatccttaaatcctttttcaaca |
116 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38852821 |
cagtcaacacctatgcctccctacctgcacatattcaacaatgtttgccttttgaaattgcagtcctcatcactcatgatccttaaatcctttttcaaca |
38852920 |
T |
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| Q |
117 |
gccacatcttgtcgacaaatcaaccttaaaagctccaagcaaatcaca-aaaacagttgccaaccaagtaacataaacaatgaagaatgagccctgagaa |
215 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
38852921 |
gccacaccttgtctacaaatcaaccttaaaagctccaagcaaatcacagaaaacagttgccaaccaagtaacagaaacaatgaagaatgagccctgagaa |
38853020 |
T |
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| Q |
216 |
gcaaaacccacataacttgtataacattattgccacagtttttgtcatccacctaaatggcagcatctacaccattaatattcacaaatgagaaatcagg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38853021 |
gcaaaacccacataacttgtataacattattgccacagtttttgtcatccacctaagtggcagcatctacaccattaatattcacaaatgagaaatcagg |
38853120 |
T |
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| Q |
316 |
gtcctccaatttcactaccattggtgttc |
344 |
Q |
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| T |
38853121 |
gtcctccaatttcactaccattgatgttc |
38853149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 2212496 - 2212234
Alignment:
| Q |
17 |
cagtcaacacctctgcctccctgcctgcacatattcaacaatgtttgccttttaaaattgcagtcctcatcactcatgatccttaaatcctttttcaaca |
116 |
Q |
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||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2212496 |
cagtcaacatctctgcctccctgcctgcacatattccaaaatgtttgccttttgaaattgcagtcctcatcactcatgatccttaaatcctttttcaaca |
2212397 |
T |
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| Q |
117 |
gccacatcttgtcgacaaatcaaccttaaaagctccaagcaaatcaca-aaaacagttgccaaccaagtaacataaacaatgaagaatgagccctgagaa |
215 |
Q |
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|||||| |||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
2212396 |
gccacaccttgtctacaaatcaacattaaaagctccaagcaaatcacaaaaaacagttgccaatcaagtaacagaaacaatgaagaatgagccctgagaa |
2212297 |
T |
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| Q |
216 |
gcaaaacccacataacttgtataacattattgccacagtttttgtcatccacctaaatggcag |
278 |
Q |
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| T |
2212296 |
gcaaaacccacataacttgtatagcattattgccacactttttgtcatccacctaaatggcag |
2212234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 2253179 - 2253109
Alignment:
| Q |
274 |
ggcagcatctacaccattaatattcacaaatgagaaatcagggtcctccaatttcactaccattggtgttc |
344 |
Q |
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| T |
2253179 |
ggcagcatcaacaccattaatattcacaaatgagaaatcagggtccttgaatttcactaccactggtgttc |
2253109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 105 - 294
Target Start/End: Original strand, 44786700 - 44786897
Alignment:
| Q |
105 |
cctttttcaacagccacatcttgtcgacaaatcaacc-----ttaaaagctccaagcaaatcacaaa-aacagttgccaaccaagtaacataaacaatga |
198 |
Q |
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|||||||||| ||||||| |||||| || |||||||| |||| ||| ||||| ||||| |||| |||||||||||||||||||||| || ||| | |
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| T |
44786700 |
cctttttcaatagccacaccttgtctactaatcaaccctttcttaatagccccaagaaaatcccaaagaacagttgccaaccaagtaacagaaccaacgg |
44786799 |
T |
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| Q |
199 |
aga-atgagccctgagaagcaaaacccacataacttgtataacattattgccacagtttttgtcatcca-cctaaatggcagcatctacaccattaat |
294 |
Q |
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| T |
44786800 |
cgcgatgagccatgagaagcaaaacccacgtaacttgtatgacattcttaccgcaatttttgtccaccagcctaaatggcagcgtatgcaccattaat |
44786897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 105 - 294
Target Start/End: Original strand, 28334730 - 28334927
Alignment:
| Q |
105 |
cctttttcaacagccacatcttgtcgacaaatcaacc-----ttaaaagctccaagcaaatcacaaa-aacagttgccaaccaagtaacataaacaatga |
198 |
Q |
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|||||||||| ||||||| |||||| || |||||||| |||| ||| ||||| ||||| |||| ||||||||||||||||||| || || ||| | |
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| T |
28334730 |
cctttttcaatagccacaccttgtctactaatcaaccctttcttaatagccccaagaaaatcccaaagaacagttgccaaccaagtatcagaatcaacgg |
28334829 |
T |
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| Q |
199 |
aga-atgagccctgagaagcaaaacccacataacttgtataacattattgccacagtttttgtcatcca-cctaaatggcagcatctacaccattaat |
294 |
Q |
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| T |
28334830 |
cgcgatgagccttgagaagcaaaacccacgtaacttgtatgacattcttaccgctatttttgtccaccagcctaaatggcagcgtatgcaccattaat |
28334927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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