View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13764_high_3 (Length: 682)
Name: NF13764_high_3
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_high_3 |
 | |
|
| [»] scaffold0300 (1 HSPs) |
| | |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 596; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 20 - 671
Target Start/End: Original strand, 44477911 - 44478562
Alignment:
| Q |
20 |
ccatgtagcttggaaggcaaagaaaatggcaaaagaaatcattgaaggtgatgctaagaaacaatatactctgctttggaggtatgctgctgagttgcac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44477911 |
ccatgtagcttggaaggcaaagaaaatggctaaagaaatcattgaaggtgatgctaagaaacaatatactctgctttggaggtatgctgctgagttgcac |
44478010 |
T |
|
| Q |
120 |
agagtttcattgggaaataccctcaaaattaatgtggagagaacactgttaacaaatcaaccaaggttcaacaagttttatttctgctttgaaggttgta |
219 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44478011 |
agagtttcattgggaaataccctcaagattaatgtggagagaacactgttaacaaatcaaccaaggttcaacaagttttatttctgttttgaaggttgta |
44478110 |
T |
|
| Q |
220 |
aaaaaggatttttgagtggatgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagaga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44478111 |
aaaaaggatttttgagtggatgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagaga |
44478210 |
T |
|
| Q |
320 |
tgcaaatgatcagtattacccattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44478211 |
tgcaaatgatcagtattacccattggcttttggagtggttgagaatgagactaatgaagcttggagatggttcttgacattgctacttaatgatattggc |
44478310 |
T |
|
| Q |
420 |
actgataggagatgggtctttatatcagaccaacaaaaggtaaataatttatgttttgagactaatttgtacttatgttatgttttgctctgtgtactta |
519 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| |||||||||| |
|
|
| T |
44478311 |
actgacaggagatgggtctttataacagaccaacaaaaggtaaatagtttatgttttgagactaatttgtacttatgttttgttatgctgtgtgtactta |
44478410 |
T |
|
| Q |
520 |
tgttttgttttgctatgtgtgtactctagggattgattccagttttagaagaatggtctgacagggttgaacataggctgtgtttcagacatttatatgc |
619 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||| |
|
|
| T |
44478411 |
tgttttcttttgctatgtgtgtactctagggattgattccagttttagaagaatggtctgacaggcttgaacataggttgtgtttgagacatttatatgc |
44478510 |
T |
|
| Q |
620 |
taacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
671 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44478511 |
taacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
44478562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 195 - 465
Target Start/End: Original strand, 34584692 - 34584962
Alignment:
| Q |
195 |
ttttatttctgctttgaaggttgtaaaaaaggatttttgagtggatgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaa |
294 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| || |||| ||| ||||| || ||||| || || |||||||| ||| |||||||| ||||| || |
|
|
| T |
34584692 |
ttttatttttgctttgaaggttgtaaacaagggttcttgaatggttgtagacccttcataggtgtagatggatgtcatttgaaaacacaatatggcgggc |
34584791 |
T |
|
| Q |
295 |
tactactggttgctgttggaagagatgcaaatgatcagtattacccattggcttttggagtggttgagaatgagactaatgatgcttggagatggttctt |
394 |
Q |
| |
|
||| ||| | ||||| ||||||||||| ||||| || ||||| || | ||||||||| | ||||| ||||| || ||| | ||||| ||||| || |
|
|
| T |
34584792 |
aacttctgatagctgtgggaagagatgctaatgaccaatattatcctcttgcttttggaattgttgaagttgagaatactgaatcatggaggtggttttt |
34584891 |
T |
|
| Q |
395 |
gacattgctacttaatgatattggcactgataggagatgggtctttatatcagaccaacaaaaggtaaata |
465 |
Q |
| |
|
|| | |||| | |||||||| ||||| | ||||||||| |||||||| || |||||||||||||||| |
|
|
| T |
34584892 |
aactcttttactagaggatattggaactgagaagagatgggtatttatatctgatcaacaaaaggtaaata |
34584962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 606 - 646
Target Start/End: Complemental strand, 30038015 - 30037975
Alignment:
| Q |
606 |
agacatttatatgctaacttcaagaagaagtttggaggagg |
646 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
30038015 |
agacatttgtatgctaatttcaagaagaagtttggaggagg |
30037975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 606 - 671
Target Start/End: Original strand, 46240524 - 46240589
Alignment:
| Q |
606 |
agacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
671 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| ||||| || | || || |||||||||||| |
|
|
| T |
46240524 |
agacatttgtatgctaacttcaagaagaaatttggtggaggtactcttataagggacttgatgatg |
46240589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 588; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 20 - 671
Target Start/End: Complemental strand, 21976267 - 21975616
Alignment:
| Q |
20 |
ccatgtagcttggaaggcaaagaaaatggcaaaagaaatcattgaaggtgatgctaagaaacaatatactctgctttggaggtatgctgctgagttgcac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
21976267 |
ccatgtagcttggaaggcaaagaaaatggctaaagaaatcattgaaggtgatgctaagaaacaatatactctgctttggaggtatactgctgagttgcac |
21976168 |
T |
|
| Q |
120 |
agagtttcattgggaaataccctcaaaattaatgtggagagaacactgttaacaaatcaaccaaggttcaacaagttttatttctgctttgaaggttgta |
219 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21976167 |
agagtttcattgggaaataccctcaagattaatgtggagagaacactgttaacaaatcaaccaaggttcaacaagttttatttctgttttgaaggttgta |
21976068 |
T |
|
| Q |
220 |
aaaaaggatttttgagtggatgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagaga |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21976067 |
aaaaaggatttttgagtggatgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgttgttggaagaga |
21975968 |
T |
|
| Q |
320 |
tgcaaatgatcagtattacccattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggc |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21975967 |
tgcaaatgatcagtattacccattggcttttggagtggttgagaatgagactaatgaagcttggagatggttcttgacattgctacttaatgatattggc |
21975868 |
T |
|
| Q |
420 |
actgataggagatgggtctttatatcagaccaacaaaaggtaaataatttatgttttgagactaatttgtacttatgttatgttttgctctgtgtactta |
519 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| |||||||||| |
|
|
| T |
21975867 |
actgacaggagatgggtctttataacagaccaacaaaaggtaaatagtttatgttttgagactaatttgtacttatgttttgttatgctgtgtgtactta |
21975768 |
T |
|
| Q |
520 |
tgttttgttttgctatgtgtgtactctagggattgattccagttttagaagaatggtctgacagggttgaacataggctgtgtttcagacatttatatgc |
619 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
21975767 |
tgttttcttttgctatgtgtgtactctagggattgattccagttttagaagaatggtctggcaggcttgaacataggctgtgtttgagacatttatatgc |
21975668 |
T |
|
| Q |
620 |
taacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
671 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21975667 |
taacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
21975616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 606 - 646
Target Start/End: Original strand, 29878555 - 29878595
Alignment:
| Q |
606 |
agacatttatatgctaacttcaagaagaagtttggaggagg |
646 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
29878555 |
agacatttgtatgctaatttcaagaagaagtttggaggagg |
29878595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 148 - 367
Target Start/End: Original strand, 47735013 - 47735232
Alignment:
| Q |
148 |
ttaatgtggagagaacactgttaacaaatcaaccaaggttcaacaagttttatttctgctttgaaggttgtaaaaaaggatttttgagtggatgtaggcc |
247 |
Q |
| |
|
||||||| |||||||| || |||||||||||||||| |||| ||||||||| || || ||||| ||||| || |||| |||||| ||| |||||||| |
|
|
| T |
47735013 |
ttaatgttgagagaaccttgataacaaatcaaccaagattcagcaagttttacttttgttttgatggttgcaagcaaggttttttggctggttgtaggcc |
47735112 |
T |
|
| Q |
248 |
tttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacccattggct |
347 |
Q |
| |
|
|| |||||||||||||| || || ||||||| | || |||||| ||| || | |||| ||||||||||||||||||||| || |||| |||||| || |
|
|
| T |
47735113 |
atttattggagtggatgggtgtcacttgaaaactaagtttggaggtatattattagttgatgttggaagagatgcaaatgaccaatatttcccattagca |
47735212 |
T |
|
| Q |
348 |
tttggagtggttgagaatga |
367 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
47735213 |
tttggagttgttgagaatga |
47735232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 586 - 671
Target Start/End: Complemental strand, 14798637 - 14798552
Alignment:
| Q |
586 |
ttgaacataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
671 |
Q |
| |
|
|||| |||||| |||| || || ||||| |||||||| || |||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
14798637 |
ttgaccataggttgtgcttaaggcatttgtatgctaattttaagaagaagtttggaggaggaacattgattagagacttgatgatg |
14798552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 586 - 671
Target Start/End: Complemental strand, 15245629 - 15245544
Alignment:
| Q |
586 |
ttgaacataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
671 |
Q |
| |
|
|||| |||||| |||| || || ||||| |||||||| || |||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
15245629 |
ttgaccataggttgtgcttaaggcatttgtatgctaattttaagaagaagtttggaggaggaacattgattagagacttgatgatg |
15245544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 586 - 671
Target Start/End: Original strand, 14632754 - 14632839
Alignment:
| Q |
586 |
ttgaacataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
671 |
Q |
| |
|
|||| |||||| |||| || || ||||| |||| ||| || |||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
14632754 |
ttgaccataggttgtgcttaaggcatttgtatgataattttaagaagaagtttggaggaggaacattgattagagacttgatgatg |
14632839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 240 - 442
Target Start/End: Complemental strand, 13048261 - 13048059
Alignment:
| Q |
240 |
tgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacc |
339 |
Q |
| |
|
|||||||| ||||| || |||||||| || ||||||||||| |||||||| || || ||||||| ||||| |||||||||||||| || || | || |
|
|
| T |
13048261 |
tgtaggccattcataggggtggatgggtgtcatctgaaaacccaatatggaggtattttattggttgcagttggtagagatgcaaatgaccaatacttcc |
13048162 |
T |
|
| Q |
340 |
cattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctt |
439 |
Q |
| |
|
| ||||||||||||| || |||| |||||| | || ||||||| |||||| | || || || ||| | |||||||| ||| | ||||||||||| || |
|
|
| T |
13048161 |
ctctggcttttggagttgtagagactgagacaacatattcttggaggtggttccttaccttactgcttgaagatattggaactaacaggagatgggtgtt |
13048062 |
T |
|
| Q |
440 |
tat |
442 |
Q |
| |
|
||| |
|
|
| T |
13048061 |
tat |
13048059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 460
Target Start/End: Complemental strand, 34797603 - 34797383
Alignment:
| Q |
240 |
tgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacc |
339 |
Q |
| |
|
|||||| | ||||| || |||||||| || ||||||||||| | |||||| || || ||||||| ||||| |||||||||||||| || || | | |
|
|
| T |
34797603 |
tgtaggtcattcataggggtggatgggtgtcatctgaaaacccaatttggaggtattttattggttgcagttggtagagatgcaaatgaccaatactttc |
34797504 |
T |
|
| Q |
340 |
cattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctt |
439 |
Q |
| |
|
| |||||||||||||| || |||| ||| || | ||| | ||||| |||||| | || || || ||| | |||||||| ||| ||||||||||||| || |
|
|
| T |
34797503 |
ctttggcttttggagttgtagagactgaaacaacagattcatggaggtggttccttaccttactgcttgaagatattggaactaataggagatgggtatt |
34797404 |
T |
|
| Q |
440 |
tatatcagaccaacaaaaggt |
460 |
Q |
| |
|
||| || || ||||||||||| |
|
|
| T |
34797403 |
tatttctgatcaacaaaaggt |
34797383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 381 - 461
Target Start/End: Original strand, 37875643 - 37875723
Alignment:
| Q |
381 |
tggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctttatatcagaccaacaaaaggta |
461 |
Q |
| |
|
|||||||||||||| ||| || ||||| | ||||| || ||||| |||| |||||| || || ||||| |||||||||||| |
|
|
| T |
37875643 |
tggagatggttcttaacactgttacttgaagatatagggactgagaggaaatgggttttcatttcagatcaacaaaaggta |
37875723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 148 - 367
Target Start/End: Original strand, 35598474 - 35598693
Alignment:
| Q |
148 |
ttaatgtggagagaacactgttaacaaatcaaccaaggttcaacaagttttatttctgctttgaaggttgtaaaaaaggatttttgagtggatgtaggcc |
247 |
Q |
| |
|
||||||| |||||||| ||||||||||||||| ||| |||| ||||||||| || || ||||| ||||| || |||| |||||| ||| |||||||| |
|
|
| T |
35598474 |
ttaatgttgagagaaccttgttaacaaatcaacaaagattcagcaagttttacttttgttttgatggttgcaagcaaggttttttggctggttgtaggcc |
35598573 |
T |
|
| Q |
248 |
tttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacccattggct |
347 |
Q |
| |
|
|| |||||||||||||| || || ||||||| | || |||||| ||| || | |||| ||||||||||||||||||||| || |||| |||||| || |
|
|
| T |
35598574 |
atttattggagtggatgggtgtcacttgaaaactaagtttggaggtatattattagttgatgttggaagagatgcaaatgaccaatatttcccattagca |
35598673 |
T |
|
| Q |
348 |
tttggagtggttgagaatga |
367 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
35598674 |
tttggagttgttgagaatga |
35598693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 393 - 463
Target Start/End: Original strand, 17323260 - 17323330
Alignment:
| Q |
393 |
ttgacattgctacttaatgatattggcactgataggagatgggtctttatatcagaccaacaaaaggtaaa |
463 |
Q |
| |
|
||||| ||| ||||| |||||||||| ||||| | ||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
17323260 |
ttgaccttgttacttgatgatattggtactgagaagagatgggtctttatttcagatcaacaaaaggtaaa |
17323330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 600 - 671
Target Start/End: Complemental strand, 4497090 - 4497019
Alignment:
| Q |
600 |
tgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
671 |
Q |
| |
|
||||| |||||||||||||| |||||||| ||||||||||| || || |||||||| || ||| |||||||| |
|
|
| T |
4497090 |
tgtttaagacatttatatgcaaacttcaaaaagaagtttggtggtggaaccttgataagggacctgatgatg |
4497019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 606 - 646
Target Start/End: Original strand, 6869379 - 6869419
Alignment:
| Q |
606 |
agacatttatatgctaacttcaagaagaagtttggaggagg |
646 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
6869379 |
agacatttgtatgcaaatttcaagaagaagtttggaggagg |
6869419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 8e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 66 - 367
Target Start/End: Complemental strand, 41771790 - 41771489
Alignment:
| Q |
66 |
ggtgatgctaagaaacaatatactctgctttggaggtatgctgctgagttgcacagagtttc-attgggaaataccctcaaaattaatgtggagagaaca |
164 |
Q |
| |
|
|||||||| ||||||||||| ||||| || ||||||||||| |||||||| | || || | | |||||| || ||||| ||||||| || ||||| |
|
|
| T |
41771790 |
ggtgatgcaaagaaacaatacactctactatggaggtatgcagctgagttaaagagggtgtgtaatgggaa-taatctcaagcttaatgttgaaagaact |
41771692 |
T |
|
| Q |
165 |
ctgttaacaaatcaaccaaggttcaacaagttttatttctgctttgaaggttgtaaaaaaggatttttgagtggatgtaggcctttcattggagtggatg |
264 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||||| || || ||||| ||||| || |||| |||||| ||| |||||||| || ||||||||||||| |
|
|
| T |
41771691 |
ttgttaaccaatcaaccaagattcagcaagttttacttttgttttgatggttgcaagcaaggttttttggctggctgtaggccatttattggagtggatg |
41771592 |
T |
|
| Q |
265 |
gatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacccattggcttttggagtggttgagaa |
364 |
Q |
| |
|
| || || ||||||| | || |||||| ||| || | |||| ||||||||||||||||||||| || |||| |||||| || |||||||| |||||||| |
|
|
| T |
41771591 |
ggtgtcacttgaaaactaagtttggaggtatattattagttgatgttggaagagatgcaaatgaccaatatttcccattagcatttggagttgttgagaa |
41771492 |
T |
|
| Q |
365 |
tga |
367 |
Q |
| |
|
||| |
|
|
| T |
41771491 |
tga |
41771489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 381 - 463
Target Start/End: Complemental strand, 1379845 - 1379763
Alignment:
| Q |
381 |
tggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctttatatcagaccaacaaaaggtaaa |
463 |
Q |
| |
|
||||| ||||| ||||| || ||||| |||||||||| ||||| | ||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
1379845 |
tggaggtggtttttgaccctgttacttgatgatattggtactgagaagagatgggtctttatttcagatcaacaaaaggtaaa |
1379763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 309 - 466
Target Start/End: Complemental strand, 17130182 - 17130025
Alignment:
| Q |
309 |
gttggaagagatgcaaatgatcagtattacccattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctactta |
408 |
Q |
| |
|
||||| || ||||||||||| || |||||||| || |||||||| || ||||| |||| ||| || ||||||||||||| | ||| | ||||| |
|
|
| T |
17130182 |
gttgggagggatgcaaatgaccaatattaccctttagcttttggggtagttgaagtggagaataaggaatcttggagatggtttctaacacttttacttg |
17130083 |
T |
|
| Q |
409 |
atgatattggcactgataggagatgggtctttatatcagaccaacaaaaggtaaataa |
466 |
Q |
| |
|
| |||||||| ||||||| |||||||||||| || || || |||||||||||| |||| |
|
|
| T |
17130082 |
aagatattggaactgataagagatgggtcttcatctctgatcaacaaaaggtacataa |
17130025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 606 - 646
Target Start/End: Complemental strand, 3921053 - 3921013
Alignment:
| Q |
606 |
agacatttatatgctaacttcaagaagaagtttggaggagg |
646 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
3921053 |
agacatttgtatgctaatttcaagaagaagtttggaggagg |
3921013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 8e-26; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 148 - 462
Target Start/End: Complemental strand, 13650181 - 13649870
Alignment:
| Q |
148 |
ttaatgtggagagaacactgttaacaaatcaaccaaggttcaacaagttttatttctgctttgaaggttgtaaaaaaggatttttgagtggatgtaggcc |
247 |
Q |
| |
|
||||||| |||||||| || |||||||||||||||| || | ||||||||| || | ||| | ||||| || |||| |||||| ||| |||||||| |
|
|
| T |
13650181 |
ttaatgttgagagaaccttgataacaaatcaaccaagatttagcaagttttacttttttttttatggttgcaagcaaggttttttggctggctgtaggcc |
13650082 |
T |
|
| Q |
248 |
tttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacccattggct |
347 |
Q |
| |
|
|| |||||||||||||| || || ||||||| | || |||| | ||| || | |||||||||||||||||||||||||| || |||| |||||| || |
|
|
| T |
13650081 |
atttattggagtggatgggtgtcacttgaaaactaagtttggatgtatattattagttgctgttggaagagatgcaaatgaccaatatttcccattagca |
13649982 |
T |
|
| Q |
348 |
tttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctttatatcag |
447 |
Q |
| |
|
|||||||| ||||||||||| || || || ||||||| ||||| || || || || ||| | |||||||| | | | |||||||| ||||| |||| |
|
|
| T |
13649981 |
tttggagttgttgagaatgaaaccaaagagacttggaggtggtttttaactttactgcttgaagatattggaa---acaaaagatgggtgtttatttcag |
13649885 |
T |
|
| Q |
448 |
accaacaaaaggtaa |
462 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
13649884 |
atcaacaaaaggtaa |
13649870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 309 - 461
Target Start/End: Original strand, 20653593 - 20653745
Alignment:
| Q |
309 |
gttggaagagatgcaaatgatcagtattacccattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctactta |
408 |
Q |
| |
|
||||| || ||||||||||| || |||||||| || |||||||| || ||||| |||| ||| || ||||||||||||| ||||| || ||||| |
|
|
| T |
20653593 |
gttggtagggatgcaaatgaccaatattaccctttagcttttggggttgttgaagtggagaataaggaatcttggagatggtttctgacactgttacttg |
20653692 |
T |
|
| Q |
409 |
atgatattggcactgataggagatgggtctttatatcagaccaacaaaaggta |
461 |
Q |
| |
|
| |||||||| |||||| |||||||||||| || || || |||||||||||| |
|
|
| T |
20653693 |
aagatattggagctgataagagatgggtcttcatctctgatcaacaaaaggta |
20653745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 591 - 671
Target Start/End: Original strand, 22056668 - 22056748
Alignment:
| Q |
591 |
cataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
671 |
Q |
| |
|
||||| |||||||| || ||||||||||| || ||||| ||||| ||||||||||| || | ||||||||| | |||||| |
|
|
| T |
22056668 |
catagactgtgtttgaggcatttatatgccaatttcaaaaagaaatttggaggaggtacacttattagagaccttatgatg |
22056748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 240 - 460
Target Start/End: Complemental strand, 22371035 - 22370815
Alignment:
| Q |
240 |
tgtaggcctttcattggagtggatggatgccatctgaaaacaatgtatggaggaatactactggttgctgttggaagagatgcaaatgatcagtattacc |
339 |
Q |
| |
|
|||||||| ||||| || |||||||| || ||| ||||||| |||||||| || || ||||||| || || |||||||||||||| || |||| || |
|
|
| T |
22371035 |
tgtaggccattcataggggtggatggttgtcatttgaaaacccaatatggaggtattttattggttgcagtgggtagagatgcaaatgaccaatatttcc |
22370936 |
T |
|
| Q |
340 |
cattggcttttggagtggttgagaatgagactaatgatgcttggagatggttcttgacattgctacttaatgatattggcactgataggagatgggtctt |
439 |
Q |
| |
|
| |||||||||||||| || |||| |||||| | ||| ||||||| |||||| | || || || ||| | |||||||| ||| ||||||||||||| || |
|
|
| T |
22370935 |
ctttggcttttggagttgtagagactgagacaacagattcttggaggtggttccttaccttactgcttgaagatattggaactaataggagatgggtatt |
22370836 |
T |
|
| Q |
440 |
tatatcagaccaacaaaaggt |
460 |
Q |
| |
|
||| || |||||||||||||| |
|
|
| T |
22370835 |
tatctctgaccaacaaaaggt |
22370815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 600 - 671
Target Start/End: Complemental strand, 24675898 - 24675827
Alignment:
| Q |
600 |
tgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
671 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||||||| || || |||||||| || ||| |||||||| |
|
|
| T |
24675898 |
tgtttaagacatttatatgcaaactacaagaagaagtttggtggtggaaccttgataagggacctgatgatg |
24675827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 591 - 671
Target Start/End: Original strand, 19395874 - 19395954
Alignment:
| Q |
591 |
cataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
671 |
Q |
| |
|
||||| |||||||| || ||||||||||| || ||||| ||||| ||||||||||| || | ||||||||| | |||||| |
|
|
| T |
19395874 |
catagactgtgtttgaggcatttatatgccaatttcaaaaagaaatttggaggaggtacacttattagagaccttatgatg |
19395954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 586 - 671
Target Start/End: Original strand, 26268773 - 26268858
Alignment:
| Q |
586 |
ttgaacataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
671 |
Q |
| |
|
|||| |||||| |||| || || ||||| |||||||| || |||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
26268773 |
ttgaccataggttgtgcttaaggcatttgtatgctaattttaagaagaagtttggaggaggaacattgattagagacttgatgatg |
26268858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 281
Target Start/End: Original strand, 30964578 - 30964664
Alignment:
| Q |
195 |
ttttatttctgctttgaaggttgtaaaaaaggatttttgagtggatgtaggcctttcattggagtggatggatgccatctgaaaaca |
281 |
Q |
| |
|
|||||||| |||||||||||||||||| |||| || |||| ||| ||||| || ||||| || || |||||||| ||| |||||||| |
|
|
| T |
30964578 |
ttttatttttgctttgaaggttgtaaacaagggttcttgaatggttgtagacccttcataggtgtagatggatgtcatttgaaaaca |
30964664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 591 - 671
Target Start/End: Original strand, 31812335 - 31812415
Alignment:
| Q |
591 |
cataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
671 |
Q |
| |
|
||||| |||||||| || ||||||||||| || ||||| ||||| ||||||||||| || | ||||||||| | |||||| |
|
|
| T |
31812335 |
catagactgtgtttgaggcatttatatgccaatttcaaaaagaaatttggaggaggtacacttattagagaccttatgatg |
31812415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 600 - 671
Target Start/End: Original strand, 18433 - 18504
Alignment:
| Q |
600 |
tgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
671 |
Q |
| |
|
||||| |||||||||||||| |||| ||||||||||||||| || || |||||||| || ||| |||||||| |
|
|
| T |
18433 |
tgtttaagacatttatatgcaaactacaagaagaagtttggtggtggaaccttgataagggacctgatgatg |
18504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 591 - 671
Target Start/End: Original strand, 786 - 866
Alignment:
| Q |
591 |
cataggctgtgtttcagacatttatatgctaacttcaagaagaagtttggaggagggaccttgattagagacttgatgatg |
671 |
Q |
| |
|
||||| |||||||| || ||||||||||| || ||||| ||||| ||||||||||| || | ||||||||| | |||||| |
|
|
| T |
786 |
catagactgtgtttgaggcatttatatgccaatttcaaaaagaaatttggaggaggtacacttattagagaccttatgatg |
866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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