View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_high_33 (Length: 326)
Name: NF13764_high_33
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 7018553 - 7018807
Alignment:
| Q |
1 |
taccaatgttcacctctctattttgatcgacgtcatttcgtctatgtggtgacgagcaaccaaggcttaaactctccttaatctatgtccttgtgtcaac |
100 |
Q |
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| T |
7018553 |
taccaatgttcacctctctattttgatcgacgtcatttcgcctatgtggtgacgagcaaccaaggcttaaactctccttaatctatgtccttgtgtcaac |
7018652 |
T |
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| Q |
101 |
ttgctgatgagcgaccaaggttcaaccttttctttgactgacgtcgttgtgccgttatggtgatgagagaccaagacccaag--ctctccttcgcacaac |
198 |
Q |
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| T |
7018653 |
ttgatgatgagcgaccaaggttcaaccttttctttgactgacgtcgttgtgccgttatggtgatgagagaccaagacccaagctctctccttcgcacaac |
7018752 |
T |
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| Q |
199 |
gtccttgtgtgacatggtgatgagtgactaagctcatgatctccttcatctaacg |
253 |
Q |
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| T |
7018753 |
gtccttgtgtgacatggtgatgagtgactaagctcatgatctccttcatctaacg |
7018807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 7019044 - 7019093
Alignment:
| Q |
157 |
atggtgatgagagaccaagacccaagctctccttcgcacaacgtccttgtg |
207 |
Q |
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| T |
7019044 |
atggtgatgagtgaccaagactcaagctctccttcg-accacgtccttgtg |
7019093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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