View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13764_high_41 (Length: 284)

Name: NF13764_high_41
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13764_high_41
NF13764_high_41
[»] chr6 (5 HSPs)
chr6 (155-275)||(4422198-4422318)
chr6 (123-153)||(11955948-11955978)
chr6 (123-153)||(17937058-17937088)
chr6 (123-153)||(18310085-18310115)
chr6 (123-155)||(1076736-1076768)
[»] chr8 (9 HSPs)
chr8 (123-155)||(3308528-3308560)
chr8 (123-153)||(9757155-9757185)
chr8 (123-153)||(23524540-23524570)
chr8 (123-153)||(27273030-27273060)
chr8 (123-153)||(36603785-36603815)
chr8 (123-153)||(42781726-42781756)
chr8 (123-152)||(44597256-44597285)
chr8 (155-183)||(6480952-6480980)
chr8 (152-184)||(36603861-36603893)
[»] chr7 (4 HSPs)
chr7 (123-154)||(42684860-42684891)
chr7 (123-153)||(17465979-17466009)
chr7 (123-153)||(17587205-17587235)
chr7 (155-183)||(42684784-42684812)
[»] scaffold0121 (2 HSPs)
scaffold0121 (157-187)||(18340-18370)
scaffold0121 (123-153)||(23455-23485)
[»] chr5 (5 HSPs)
chr5 (123-153)||(20998701-20998731)
chr5 (123-153)||(33614088-33614118)
chr5 (155-184)||(27060123-27060152)
chr5 (155-183)||(3154381-3154409)
chr5 (123-155)||(7282187-7282219)
[»] chr4 (8 HSPs)
chr4 (123-153)||(2775378-2775408)
chr4 (123-153)||(21351430-21351460)
chr4 (123-153)||(22118194-22118224)
chr4 (155-184)||(17696581-17696610)
chr4 (123-152)||(28970888-28970917)
chr4 (157-186)||(53338817-53338846)
chr4 (124-153)||(54333919-54333948)
chr4 (123-155)||(15658362-15658394)
[»] chr3 (4 HSPs)
chr3 (123-153)||(11331494-11331524)
chr3 (123-153)||(35091510-35091540)
chr3 (123-153)||(51244948-51244978)
chr3 (123-152)||(50767754-50767783)
[»] chr2 (6 HSPs)
chr2 (123-153)||(1466730-1466760)
chr2 (123-153)||(19132500-19132530)
chr2 (123-153)||(26818156-26818186)
chr2 (123-152)||(11704615-11704644)
chr2 (151-188)||(15336361-15336398)
chr2 (123-152)||(26825374-26825403)
[»] scaffold0242 (1 HSPs)
scaffold0242 (123-152)||(5902-5931)
[»] chr1 (1 HSPs)
chr1 (123-151)||(27792806-27792834)


Alignment Details
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 155 - 275
Target Start/End: Complemental strand, 4422318 - 4422198
Alignment:
155 ggatttatctttataatatagtaagtagactaataactaataactttagcaattatataagtgactttagtgtttattttgatgaaaatcaaatactttt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4422318 ggatttatctttataatatagtaagtagactaataactaataactttagcaattatataagtgactttagtgtttattttgatgaaaatcaaatactttt 4422219  T
255 tagtgatatgatgatgatgat 275  Q
    | ||||||||||||| |||||    
4422218 ttgtgatatgatgattatgat 4422198  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 11955948 - 11955978
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
11955948 atgaggtggcactaaccacaccccatcaata 11955978  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 17937088 - 17937058
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
17937088 atgaggtggcactaaccacaccccatcaata 17937058  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 18310115 - 18310085
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
18310115 atgaggtggcactaaccacaccccatcaata 18310085  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 1076736 - 1076768
Alignment:
123 atgaggtggcactaaccacaccccatcaataag 155  Q
    ||||||||||| |||||||||||||||||||||    
1076736 atgaggtggcattaaccacaccccatcaataag 1076768  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 3308528 - 3308560
Alignment:
123 atgaggtggcactaaccacaccccatcaataag 155  Q
    |||||||||||||||||||||||||||||||||    
3308528 atgaggtggcactaaccacaccccatcaataag 3308560  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 9757185 - 9757155
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
9757185 atgaggtggcactaaccacaccccatcaata 9757155  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 23524540 - 23524570
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
23524540 atgaggtggcactaaccacaccccatcaata 23524570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 27273060 - 27273030
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
27273060 atgaggtggcactaaccacaccccatcaata 27273030  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 36603785 - 36603815
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
36603785 atgaggtggcactaaccacaccccatcaata 36603815  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 42781756 - 42781726
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
42781756 atgaggtggcactaaccacaccccatcaata 42781726  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 152
Target Start/End: Complemental strand, 44597285 - 44597256
Alignment:
123 atgaggtggcactaaccacaccccatcaat 152  Q
    ||||||||||||||||||||||||||||||    
44597285 atgaggtggcactaaccacaccccatcaat 44597256  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 6480952 - 6480980
Alignment:
155 ggatttatctttataatatagtaagtaga 183  Q
    |||||||||||||||||||||||||||||    
6480952 ggatttatctttataatatagtaagtaga 6480980  T

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Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 184
Target Start/End: Original strand, 36603861 - 36603893
Alignment:
152 taaggatttatctttataatatagtaagtagac 184  Q
    |||||| ||||||||||||||||||||||||||    
36603861 taaggacttatctttataatatagtaagtagac 36603893  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 154
Target Start/End: Complemental strand, 42684891 - 42684860
Alignment:
123 atgaggtggcactaaccacaccccatcaataa 154  Q
    ||||||||||||||||||||||||||||||||    
42684891 atgaggtggcactaaccacaccccatcaataa 42684860  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 17466009 - 17465979
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
17466009 atgaggtggcactaaccacaccccatcaata 17465979  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 17587205 - 17587235
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
17587205 atgaggtggcactaaccacaccccatcaata 17587235  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 183
Target Start/End: Complemental strand, 42684812 - 42684784
Alignment:
155 ggatttatctttataatatagtaagtaga 183  Q
    |||||||||||||||||||||||||||||    
42684812 ggatttatctttataatatagtaagtaga 42684784  T

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Target: scaffold0121 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 187
Target Start/End: Original strand, 18340 - 18370
Alignment:
157 atttatctttataatatagtaagtagactaa 187  Q
    |||||||||||||||||||||||||||||||    
18340 atttatctttataatatagtaagtagactaa 18370  T

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Target: scaffold0121; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 23455 - 23485
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
23455 atgaggtggcactaaccacaccccatcaata 23485  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 20998701 - 20998731
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
20998701 atgaggtggcactaaccacaccccatcaata 20998731  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 33614088 - 33614118
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
33614088 atgaggtggcactaaccacaccccatcaata 33614118  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 184
Target Start/End: Complemental strand, 27060152 - 27060123
Alignment:
155 ggatttatctttataatatagtaagtagac 184  Q
    ||||||||||||||||||||||||||||||    
27060152 ggatttatctttataatatagtaagtagac 27060123  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 3154381 - 3154409
Alignment:
155 ggatttatctttataatatagtaagtaga 183  Q
    |||||||||||||||||||||||||||||    
3154381 ggatttatctttataatatagtaagtaga 3154409  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 7282219 - 7282187
Alignment:
123 atgaggtggcactaaccacaccccatcaataag 155  Q
    |||||||| ||||||||||||||||||||||||    
7282219 atgaggtgacactaaccacaccccatcaataag 7282187  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 2775408 - 2775378
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
2775408 atgaggtggcactaaccacaccccatcaata 2775378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 21351460 - 21351430
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
21351460 atgaggtggcactaaccacaccccatcaata 21351430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 22118194 - 22118224
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
22118194 atgaggtggcactaaccacaccccatcaata 22118224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 184
Target Start/End: Complemental strand, 17696610 - 17696581
Alignment:
155 ggatttatctttataatatagtaagtagac 184  Q
    ||||||||||||||||||||||||||||||    
17696610 ggatttatctttataatatagtaagtagac 17696581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 152
Target Start/End: Complemental strand, 28970917 - 28970888
Alignment:
123 atgaggtggcactaaccacaccccatcaat 152  Q
    ||||||||||||||||||||||||||||||    
28970917 atgaggtggcactaaccacaccccatcaat 28970888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 53338846 - 53338817
Alignment:
157 atttatctttataatatagtaagtagacta 186  Q
    ||||||||||||||||||||||||||||||    
53338846 atttatctttataatatagtaagtagacta 53338817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Original strand, 54333919 - 54333948
Alignment:
124 tgaggtggcactaaccacaccccatcaata 153  Q
    ||||||||||||||||||||||||||||||    
54333919 tgaggtggcactaaccacaccccatcaata 54333948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 15658362 - 15658394
Alignment:
123 atgaggtggcactaaccacaccccatcaataag 155  Q
    |||||||| ||||||||||||||||||||||||    
15658362 atgaggtgacactaaccacaccccatcaataag 15658394  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 11331494 - 11331524
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
11331494 atgaggtggcactaaccacaccccatcaata 11331524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 35091510 - 35091540
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
35091510 atgaggtggcactaaccacaccccatcaata 35091540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 51244978 - 51244948
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
51244978 atgaggtggcactaaccacaccccatcaata 51244948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 50767754 - 50767783
Alignment:
123 atgaggtggcactaaccacaccccatcaat 152  Q
    ||||||||||||||||||||||||||||||    
50767754 atgaggtggcactaaccacaccccatcaat 50767783  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 1466760 - 1466730
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
1466760 atgaggtggcactaaccacaccccatcaata 1466730  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Original strand, 19132500 - 19132530
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
19132500 atgaggtggcactaaccacaccccatcaata 19132530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 153
Target Start/End: Complemental strand, 26818186 - 26818156
Alignment:
123 atgaggtggcactaaccacaccccatcaata 153  Q
    |||||||||||||||||||||||||||||||    
26818186 atgaggtggcactaaccacaccccatcaata 26818156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 152
Target Start/End: Complemental strand, 11704644 - 11704615
Alignment:
123 atgaggtggcactaaccacaccccatcaat 152  Q
    ||||||||||||||||||||||||||||||    
11704644 atgaggtggcactaaccacaccccatcaat 11704615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 15336398 - 15336361
Alignment:
151 ataaggatttatctttataatatagtaagtagactaat 188  Q
    ||||| ||||||||||||||||||||||||||| ||||    
15336398 ataagtatttatctttataatatagtaagtagagtaat 15336361  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 152
Target Start/End: Complemental strand, 26825403 - 26825374
Alignment:
123 atgaggtggcactaaccacaccccatcaat 152  Q
    ||||||||||||||||||||||||||||||    
26825403 atgaggtggcactaaccacaccccatcaat 26825374  T

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Target: scaffold0242 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 152
Target Start/End: Original strand, 5902 - 5931
Alignment:
123 atgaggtggcactaaccacaccccatcaat 152  Q
    ||||||||||||||||||||||||||||||    
5902 atgaggtggcactaaccacaccccatcaat 5931  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 27792834 - 27792806
Alignment:
123 atgaggtggcactaaccacaccccatcaa 151  Q
    |||||||||||||||||||||||||||||    
27792834 atgaggtggcactaaccacaccccatcaa 27792806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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