View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13764_high_45 (Length: 275)

Name: NF13764_high_45
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13764_high_45
NF13764_high_45
[»] chr4 (8 HSPs)
chr4 (18-241)||(55635347-55635573)
chr4 (18-241)||(54861990-54862212)
chr4 (20-239)||(55665387-55665602)
chr4 (18-241)||(55659170-55659392)
chr4 (18-241)||(54627129-54627352)
chr4 (207-241)||(3671817-3671851)
chr4 (44-122)||(50192010-50192088)
chr4 (18-63)||(52985800-52985845)
[»] chr8 (1 HSPs)
chr8 (18-241)||(9889632-9889852)
[»] chr2 (1 HSPs)
chr2 (20-241)||(13401527-13401753)
[»] chr7 (1 HSPs)
chr7 (25-104)||(46155168-46155247)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 55635347 - 55635573
Alignment:
Q  18 atcccagttgaatgagcaagcaaggctttctatgctgagaattgccacatggaccttgtcaaatttttgtaggggaaagccacaacccctatttgagcag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  55635347 atcccagttgaatgagcaagcaaggctttctatgctgagaattgccacatggaccttgtcaaacttttgcaggggaaagccacaacccctatttgagcag 55635446  T
Q  118 gtaattgttatttttgttaaattaaaaactgaacctgcaagaagacctttatttgtgtattaatactag---attttttatgtacaggtgaggccagcac 214  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||    
T  55635447 gtaattgttgtttttgttaaattaaaaactaaacctgcaagaagacctttatttgtgtattaatactagattattttttatgtacaggtgaggccagcac 55635546  T
Q  215 ttcccactctcgagcgtttgatttttt 241  Q
    |||||||||||||||||||||||||||    
T  55635547 ttcccactctcgagcgtttgatttttt 55635573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 54862212 - 54861990
Alignment:
Q  18 atcccagttgaatgagcaagcaaggctttctatgctgagaattgccacatggaccttgtcaaatttttgtaggggaaagccacaacccctatttgagcag 117  Q
    ||||||||||||||| ||| ||  ||||| |||  |||||| |||||  |||||||||||||| ||||| ||||| ||||||||||||| | ||||||||    
T  54862212 atcccagttgaatgaccaaacagagctttatatattgagaaatgccatttggaccttgtcaaacttttgcaggggcaagccacaacccccacttgagcag 54862113  T
Q  118 gtaattgttatttttgttaaattaaaaactgaacctgcaagaagacctttatttgtgtattaatactagattttttatgtacaggtgaggccagcacttc 217  Q
    ||||||||| ||||| ||||||| |||||||||||| ||||| ||||||||| ||||||||||||||||| |||| ||| |||| |||||||||| ||||    
T  54862112 gtaattgttgtttttattaaatt-aaaactgaacctacaagacgacctttatctgtgtattaatactagaattttgatggacagatgaggccagcgcttc 54862014  T
Q  218 ccactctcgagcgtttgatttttt 241  Q
    || ||||| ||| |||| ||||||    
T  54862013 ccgctctcaagcatttggtttttt 54861990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 55665602 - 55665387
Alignment:
Q  20 cccagttgaatgagcaagcaaggctttctatgctgagaattgccacatggaccttgtcaaatttttgtaggggaaagccacaacccctatttgagcaggt 119  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||| |||||| ||||||  ||||| |  || ||||||| ||||| | ||||||||||    
T  55665602 cccagttgaatgagcaagcaaagctttctatgctgagagttgccacgtggaccctgtcaagcttttgcaaaggcaagccaccacccccaattgagcaggt 55665503  T
Q  120 aattgttatttttgttaaattaaaaactgaacctgcaagaagacctttatttgtgtattaatactagattttttatgtacaggtgaggccagcacttccc 219  Q
    | ||||| ||||||||||||| |||| |||||||||   ||||| ||| | |||||||||||||||| ||||||||| ||||||||||||||| || |||    
T  55665502 agttgttgtttttgttaaatt-aaaattgaacctgc---aagacatttgtctgtgtattaatactaggttttttatggacaggtgaggccagcgctgccc 55665407  T
Q  220 actctcgagcgtttgatttt 239  Q
     |||| ||||||||||||||    
T  55665406 tctcttgagcgtttgatttt 55665387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 55659392 - 55659170
Alignment:
Q  18 atcccagttgaatgagcaagcaaggctttctatgctgagaattgccacatggaccttgtcaaatttttgtaggggaaagccacaacccctatttgagcag 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| || | | || ||||||| ||||| || ||||| |||| ||||| ||||||||||    
T  55659392 atcccagttgaatgagcaagcaaagctttctatgctgagaattgctacgttggccctgtcaaacttttgcagaggaaaaccaccacccccatttgagcag 55659293  T
Q  118 gtaattgttatttttgttaaattaaaaactgaacctgcaagaagacctttattt-gtgtattaatactagattttttatgtacaggtgaggccagcactt 216  Q
    ||| ||||| | ||||||||||| |||||||||  || |||||||  ||||||| || |||||||||| || |||| ||| | ||||||||| |||||||    
T  55659292 gtagttgttgtgtttgttaaatt-aaaactgaatatgtaagaaga-atttatttggtttattaatacttgaattttgatggataggtgaggcaagcactt 55659195  T
Q  217 cccactctcgagcgtttgatttttt 241  Q
    || || |||  ||||||||||||||    
T  55659194 cctaccctcaggcgtttgatttttt 55659170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 54627129 - 54627352
Alignment:
Q  18 atcccagttgaatgagcaagcaaggctttctatgctgagaattgccacatggaccttgtcaaatttttgtaggggaaagccacaacccctatttgagcag 117  Q
    ||||||| |||||||||||| | |||||| || |||||||| ||||   |||||  ||||||| ||||| ||||| ||||||||||||  | ||||||||    
T  54627129 atcccagctgaatgagcaagaagggctttataggctgagaaatgccgtttggacgctgtcaaacttttgcaggggcaagccacaacccgcacttgagcag 54627228  T
Q  118 gtaattgttattttt-gttaaattaaaaactgaacctgcaagaagacctttatttgtgtattaatactagattttttatgtacaggtgaggccagcactt 216  Q
    ||| ||||| ||||| |||||| ||||| ||||||||   ||| ||||||||| ||||||||||||||||| |||| ||| |||||||||| |||| |||    
T  54627229 gtagttgttgtttttagttaaaataaaa-ctgaacctctgagatgacctttatctgtgtattaatactagaattttgatggacaggtgaggtcagcgctt 54627327  T
Q  217 cccactctcgagcgtttgatttttt 241  Q
    ||| ||||| || ||||| ||||||    
T  54627328 cccgctctcaagtgtttggtttttt 54627352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 3671851 - 3671817
Alignment:
Q  207 gccagcacttcccactctcgagcgtttgatttttt 241  Q
    |||||||||||||||||||||||||||||||||||    
T  3671851 gccagcacttcccactctcgagcgtttgatttttt 3671817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 50192088 - 50192010
Alignment:
Q  44 tttctatgctgagaattgccacatggaccttgtcaaatttttgtaggggaaagccacaacccctatttgagcaggtaat 122  Q
    |||| |||||||||| |||||||||||| || ||||| || |||||||||||||||| |||   |||||||| ||||||    
T  50192088 tttcaatgctgagaaatgccacatggactttatcaaacttctgtaggggaaagccaccacctgcatttgagctggtaat 50192010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 52985845 - 52985800
Alignment:
Q  18 atcccagttgaatgagcaagcaaggctttctatgctgagaattgcc 63  Q
    ||||||||| ||||| ||| |||||||||||||||||||| |||||    
T  52985845 atcccagttcaatgatcaaacaaggctttctatgctgagagttgcc 52985800  T

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Target: chr8 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 9889632 - 9889852
Alignment:
Q  18 atcccagttgaatgagcaagcaaggctttctatgctgagaattgccacatggaccttgtcaaatttttgtaggggaaagccacaacccctatttgagcag 117  Q
    |||||| |||||||||| ||||    ||||||||||||||||||| ||  | ||| ||||||| ||||||||||| || || |||||||| |||||||||    
T  9889632 atcccacttgaatgagctagcagatatttctatgctgagaattgcaacgcgaaccctgtcaaacttttgtaggggcaaaccgcaacccctgtttgagcag 9889731  T
Q  118 gtaattgttatttttgttaaattaaaaactgaacctgcaagaagacctttatttgtgtattaatactagattttttatgtacaggtgaggccagcacttc 217  Q
    ||| ||||| |||||||| |||||||||   ||||   || |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  9889732 gtagttgttgtttttgttgaattaaaaa---aacccttaaaaagacctttatttgtgtattaatactagattttttatggacagttgaggccagcacttc 9889828  T
Q  218 ccactctcgagcgtttgatttttt 241  Q
    |||||||||||| |||||||||||    
T  9889829 ccactctcgagcttttgatttttt 9889852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 20 - 241
Target Start/End: Original strand, 13401527 - 13401753
Alignment:
Q  20 cccagttgaatgagcaagcaaggctttctatgctgagaattgccacatggaccttgtcaaatttttgtaggggaaagccacaacccctatttgagcaggt 119  Q
    |||||||||||||||| |||| |||||| |||||||||| ||||||||||||  ||||||| ||||| ||||| ||||||||||| | |||||| |||||    
T  13401527 cccagttgaatgagcaggcaaagctttcaatgctgagaaatgccacatggactctgtcaaacttttgcaggggcaagccacaacctccatttgatcaggt 13401626  T
Q  120 aattgttatttttgtta--aattaaaaactgaacctgcaagaagacctttatttgtgtattaatacta---gattttttatgtacaggtgaggccagcac 214  Q
    | ||||| |||||  ||  || | | |||||||| |||||   | ||||  |||||||||||||| ||   ||  ||| ||| |||||||||||||||||    
T  13401627 agttgttgttttttgtaataaatcataactgaacatgcaaacgggccttcttttgtgtattaataataattgaactttgatggacaggtgaggccagcac 13401726  T
Q  215 ttcccactctcgagcgtttgatttttt 241  Q
    ||||  |||| ||||||||| ||||||    
T  13401727 ttccggctcttgagcgtttggtttttt 13401753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 104
Target Start/End: Complemental strand, 46155247 - 46155168
Alignment:
Q  25 ttgaatgagcaagcaaggctttctatgctgagaattgccacatggaccttgtcaaatttttgtaggggaaagccacaacc 104  Q
    ||||||||||| || |  ||||||||||| |||| ||||||||||||  | ||||| || || |||||||||||||||||    
T  46155247 ttgaatgagcatgctaaactttctatgcttagaaatgccacatggacactctcaaacttctgcaggggaaagccacaacc 46155168  T

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