View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13764_high_50 (Length: 264)
Name: NF13764_high_50
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_high_50 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 250
Target Start/End: Original strand, 39293981 - 39294228
Alignment:
| Q |
4 |
atcatctttttcctttcagttaatttcggcttgcatctgttcggctgatcctctttagagtacctccagggtgtctcataatcagcaaggaacgtaactt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39293981 |
atcatctttttcctttcagttaatttcggcttgcatgtgttcggctgatcctctttagagcacctccagggtgtctcataatcagcaaggaacgtaactt |
39294080 |
T |
|
| Q |
104 |
tgaacatctttgagcatgaaataac-nnnnnnnctttctttctaattctctagattttaaagaaaaatggtctgataatctggagttcagcaaaagataa |
202 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
39294081 |
tgaacatctttgagcatgtaataacttttttttttttctttctaattctctagattttaaagaaaaatggtctgataatctggagttcagcaagagataa |
39294180 |
T |
|
| Q |
203 |
gtaaaatcggatcaataattatttcacacggaaactaagttcatattt |
250 |
Q |
| |
|
||||||||||| ||||||||||||||| | |||||||||| |||||| |
|
|
| T |
39294181 |
ataaaatcggattaataattatttcacatgaaaactaagttaatattt |
39294228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 40384942 - 40384909
Alignment:
| Q |
193 |
caaaagataagtaaaatcggatcaataattattt |
226 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |
|
|
| T |
40384942 |
caaaagataagtaaaatctgatcaataattattt |
40384909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University