View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_high_52 (Length: 254)
Name: NF13764_high_52
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_high_52 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 32250817 - 32250597
Alignment:
| Q |
16 |
agaggtacaaagaggagaaacagtgcagtgaagaaaataaggaacataaatcagagccaaaagttgatgaagattataataatgatatgttctcgactca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250817 |
agaggtacaaagaggagaaacagtgcagtgaagaaaataaggaacataaatcagagccaaaagttgatgaagattataataatgatatgttctcgactca |
32250718 |
T |
|
| Q |
116 |
tgctactgatcctgatgaaccattgactaatgaaatcgacaatgtttgggaattgattcctgaacttgaagaaaagatgcatgaacaccagaagaaagct |
215 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32250717 |
tgttactgatcctgatgaaccattgactaatgaaatcgacaatgtttgggaattgattcctgaacttgaagaaaagatgcatgaacaccagaaaaaagct |
32250618 |
T |
|
| Q |
216 |
tttgaatttctttggcaaaac |
236 |
Q |
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||||||||||||||||||||| |
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| T |
32250617 |
tttgaatttctttggcaaaac |
32250597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 38208549 - 38208725
Alignment:
| Q |
57 |
gaacataaatcagagccaaaagttgatgaagattataataatgatatgttctcgactcatgctactgatcctgatgaaccattgactaatgaaatcgaca |
156 |
Q |
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||||| |||||| ||| |||||||||||||||| || || | |||| |||| ||||||||||||||||||||||||| | | |||| |||| |||| |
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| T |
38208549 |
gaacaaaaatcatagctaaaagttgatgaagatgatgat---ggtatgatctcaactcatgctactgatcctgatgaactaatatctaaagaaaatgaca |
38208645 |
T |
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| Q |
157 |
atgtttgggaattgattcctgaacttgaagaaaagatgcatgaacaccagaagaaagcttttgaatttctttggcaaaac |
236 |
Q |
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| T |
38208646 |
aagtttggaaattgattcaagaaatcaaaggtaagatgcatgcatgccagaaaaaggtttttgaatttccatggcaaaac |
38208725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 8845341 - 8845125
Alignment:
| Q |
23 |
caaagaggagaaacagtgcagtgaagaaaataagga---acataaatcagagccaaaagttgatgaagattataataatgatatgttctcgactcatgct |
119 |
Q |
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||||||||||||||| | |||||||||| |||| || ||| ||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| ||||| |
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| T |
8845341 |
caaagaggagaaacaatacagtgaagaagataatgatgaacaaaaatcagaggcaaaagttgatgaagatgataataaagatatgttctcaactaatgct |
8845242 |
T |
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| Q |
120 |
actgatcctgatgaaccattgactaatgaaatcgacaatgtttgggaattgattcctgaacttgaagaaaagatgcatgaacaccagaagaaagcttttg |
219 |
Q |
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| T |
8845241 |
actgatcctgatgaaccaatatctgcagaaaaagacactgtttgggaatcgattccagaactcaaagaaaagatgcatgcgcaccagaaaaaggctttta |
8845142 |
T |
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| Q |
220 |
aatttctttggcaaaac |
236 |
Q |
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| T |
8845141 |
aatttctttggcaaaac |
8845125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 8822571 - 8822744
Alignment:
| Q |
63 |
aaatcagagccaaaagttgatgaagattataataatgatatgttctcgactcatgctactgatcctgatgaaccattgactaatgaaatcgacaatgttt |
162 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||| | ||||||| || |||||||||||||||||| |||| ||| |||||||||| |
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| T |
8822571 |
aaatcagagccaaaagttgatgaagattataataagcacatgttcacaactcatgttattgatcctgatgaaccattatctaaagaagaagacaatgttt |
8822670 |
T |
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| Q |
163 |
gggaattgattcctgaacttgaagaaaagatgcatgaacaccagaagaaagcttttgaatttctttggcaaaac |
236 |
Q |
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|| |||||||||||||| | ||||||||||||||| || ||||| | || ||||||||||||||||||||| |
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| T |
8822671 |
ggaaattgattcctgaattcaaagaaaagatgcatgcgcatcagaaaagtgcctttgaatttctttggcaaaac |
8822744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 235
Target Start/End: Complemental strand, 8809453 - 8809234
Alignment:
| Q |
22 |
acaaagaggagaaacagtgcagtg---aagaaaataaggaacataaatcagagccaaaagttgatgaagattataataatgatatgttctcgactcatgc |
118 |
Q |
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|||||||||||||||| ||||||| |||| | ||| ||||| |||||| ||| ||||||| || ||||| |||||||||||||||||| |||||| | |
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| T |
8809453 |
acaaagaggagaaacaatgcagtggaaaagatactaatgaacaaaaatcaaagcaaaaagtttataaagatgataataatgatatgttcttaactcattc |
8809354 |
T |
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| Q |
119 |
tactgatcct---gatgaaccattgactaatgaaatcgacaatgtttgggaattgattcctgaacttgaagaaaagatgcatgaacaccagaagaaagct |
215 |
Q |
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| T |
8809353 |
caatgatcctcatgatgaaccattatcaaaagtataagacaatgtttgggaattgattcttgaattcaaagaaaagatgcatgcgcaccagaaaaaagct |
8809254 |
T |
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| Q |
216 |
tttgaatttctttggcaaaa |
235 |
Q |
| |
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||||||||||| | |||||| |
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| T |
8809253 |
tttgaatttctatagcaaaa |
8809234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 76 - 226
Target Start/End: Original strand, 36374722 - 36374872
Alignment:
| Q |
76 |
aagttgatgaagattataataatgatatgttctcgactcatgctactgatcctgatgaaccattgactaatgaaatcgacaatgtttgggaattgattcc |
175 |
Q |
| |
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|||||||||||||| ||||||||||| |||||| ||| |||||||||||| || ||||||| | | || |||| || | |||||||||||||||||| |
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| T |
36374722 |
aagttgatgaagatgttaataatgatacgttctcaactgatgctactgatcttggtgaaccaatatccaaagaaaatgatagtgtttgggaattgattcc |
36374821 |
T |
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| Q |
176 |
tgaacttgaagaaaagatgcatgaacaccagaagaaagcttttgaatttct |
226 |
Q |
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|||||| ||||||| ||||||| ||||||||| ||||||||||||||||| |
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| T |
36374822 |
tgaactcaaagaaaacatgcatgcacaccagaaaaaagcttttgaatttct |
36374872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 164884 - 165002
Alignment:
| Q |
113 |
tcatgctactgatcctgatgaaccattgactaatgaaatcgacaatgtttgggaattgattcctgaacttgaagaaaagatgcatgaacaccagaagaaa |
212 |
Q |
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||||||| ||||||| |||||||| | |||| ||||| ||||||||||||||||||||| ||||||| ||||||| ||||||| ||||| | ||| |
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| T |
164884 |
tcatgcttctgatcccaatgaaccaatatctaaagaaattgacaatgtttgggaattgatt-ctgaactaaaagaaaatatgcatgtgcaccaaattaaa |
164982 |
T |
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| Q |
213 |
gcttttgaatttctttggca |
232 |
Q |
| |
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| |||||||||||||||||| |
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| T |
164983 |
ggttttgaatttctttggca |
165002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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