View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_high_8 (Length: 586)
Name: NF13764_high_8
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 535
Target Start/End: Complemental strand, 38302453 - 38301927
Alignment:
| Q |
19 |
aaataagtgcccaccaaaacaaaaacaatgaatctcatcactccaaggggaaatgagattacgatgtgcaagaggctttcaaatcattcatcaaattcgt |
118 |
Q |
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| T |
38302453 |
aaataagtgcccaccaaaacaaaaacaatgaatctcatcactccaaggggaaatgagattacgatgtgcaagaggctttcaaatcattcatcaaattcgt |
38302354 |
T |
|
| Q |
119 |
taaccaaaaccattatggaccaaaaagaaagtgattaatattagaaaaacgannnnnnnnn----------acgtgtgatgtcaaatacaatgtcattct |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
38302353 |
taaccaaaaccattatggaccaaaaagaaagtgattaatattagaaaaacgattttttttttttacatcaaaagtgtgatgtcaaatacaatgtcattct |
38302254 |
T |
|
| Q |
209 |
ctctcnnnnnnntaaatataagatataggtaaacaaatacggagtcgcannnnnnnnggacaagaaatactgagtcacaagaagtatatgtattttgaca |
308 |
Q |
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| T |
38302253 |
ctctcaaaaaaataaatataagatataggtaaacaaatacggagtcgcattttttttggacaagaaatactgagtcacaagaagtgtatgtattttgaca |
38302154 |
T |
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| Q |
309 |
tttaaataacaaactttcaatattatacacaatcaaagctcaaagttctatggcctctcacttatgtccctctcatgaccactccctcccttacccatct |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38302153 |
tttaaataacaaactttcaatattatacacaatcaaagctcaaagttctatggcctctcacttatgtccctctcatgaccactccctcccttacccatct |
38302054 |
T |
|
| Q |
409 |
ctccaattccctcttggaacatataaaggctatcaaaaggagttaagtcatcatcaaccacccttttccatggaagggttcaacgttggtcctaacatgc |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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| T |
38302053 |
ctccaattccctcttggaacatataaaggctatcaaaaggagttaagtcatcatcaaccacccttttccatgtaagggttcaacgttggtcctaaaatgc |
38301954 |
T |
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| Q |
509 |
cctcaagggttaacaagtatcaacaac |
535 |
Q |
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| T |
38301953 |
cctcaagggttaataagtatcaacaac |
38301927 |
T |
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