View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13764_low_1 (Length: 1311)

Name: NF13764_low_1
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13764_low_1
NF13764_low_1
[»] chr2 (23 HSPs)
chr2 (18-796)||(8403091-8403870)
chr2 (855-1311)||(8402183-8402635)
chr2 (67-776)||(8428991-8429676)
chr2 (827-998)||(8428626-8428796)
chr2 (1204-1279)||(8427915-8427991)
chr2 (151-255)||(8376193-8376297)
chr2 (32-111)||(8368104-8368183)
chr2 (32-111)||(8401227-8401306)
chr2 (32-111)||(8422804-8422883)
chr2 (43-97)||(8411867-8411921)
chr2 (43-97)||(8433965-8434019)
chr2 (45-97)||(8376087-8376139)
chr2 (151-255)||(8395879-8395983)
chr2 (151-255)||(8405589-8405693)
chr2 (45-97)||(8431018-8431070)
chr2 (151-226)||(8430889-8430964)
chr2 (29-88)||(8459649-8459708)
chr2 (44-93)||(8416952-8417001)
chr2 (151-255)||(8411709-8411813)
chr2 (151-255)||(8433807-8433911)
chr2 (151-226)||(8416822-8416897)
chr2 (1108-1147)||(8428008-8428047)
chr2 (47-97)||(8405747-8405797)
[»] chr4 (2 HSPs)
chr4 (52-225)||(55335978-55336151)
chr4 (51-255)||(55330516-55330720)
[»] scaffold1738 (1 HSPs)
scaffold1738 (151-255)||(25-129)


Alignment Details
Target: chr2 (Bit Score: 702; Significance: 0; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 702; E-Value: 0
Query Start/End: Original strand, 18 - 796
Target Start/End: Complemental strand, 8403870 - 8403091
Alignment:
Q  18 ctttttccggtgctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403870 ctttttccggtgctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttga 8403771  T
Q  118 gcttttggaagagacagttgaacaaactattgaagagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattggga 217  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8403770 gcttttggaagagacagttgaagaaattattgaagagaaagatttgaataaaagagaaaatgatgaggtgtttgagatgaagattgcattgcaattggga 8403671  T
Q  218 agaagtgtaatggagatgagagagcttgcctcaaaatctgatgtctatcggatggaaggacgtgagatcgatgaattcgccaacaagctcttctgaaaac 317  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403670 agaagtgtaatgcagatgagagagcttgcctcaaaatctgatgtctatcggatggaaggacgtgagatcgatgaattcgccaacaagctcttctgaaaac 8403571  T
Q  318 aacatttttgttttaatttcttgtttgattcattctttacatatagattctttcgattattttgaaaataaataaagatgttgaacgtttgaggtgaaac 417  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403570 aacatttttgttttgatttcttgtttgattcattctttacatatagattctttcgattattttgaaaataaataaagatgttgaacgtttgaggtgaaac 8403471  T
Q  418 tcttacttaacacatgttagagaattgtataatgtactcccatttttctcataataaatacaatgggtacaaaaatgcttgatgaatatatattacaatg 517  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||||    
T  8403470 tcttacttaacacatgttagagaattgtataatgtactcccatttttctcataataaatacaatgggtacgacaatgcttgatgaatatatataacaatg 8403371  T
Q  518 cttgatcaattttggccacctagatggccagattgaaccaagtgttgggcgttgacacaacccggacagggaaatattctccatgatatgaacaaaaatg 617  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||    
T  8403370 cttgatcaattttggccacctagatggccagattgaaccaagtgttgggcgttgacgcaacccggatagggaaatattctccatgatatgaac-aaaatg 8403272  T
Q  618 atgtatcctctaattaac--aaaaaatgtcatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacata 715  Q
    |||||||| |||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8403271 atgtatcccctaattaacaaaaaaaatgccatattcacatgaatcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacata 8403172  T
Q  716 gttctaaaatgataatgttgacgataaacattatattttgcctgcattgcaatttgagaattttaattcattattgagcaa 796  Q
    ||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  8403171 gttctaaaatgataatgttgacgataaccattatcttttgcctccattgcaatttgagaattttaattcattattgagcaa 8403091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 855 - 1311
Target Start/End: Complemental strand, 8402635 - 8402183
Alignment:
Q  855 tatcccaaattacccatgttcataggggatattggggaatcgaccattgaatacattgcaaaattctccacaaaaatatgggaatttgcaatggttaaaa 954  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8402635 tatcccaaattacccatgttcataggggatattggggaatcgagcattgaatacattgcaaaattctccacaaaaatatgggaatttgcaatggttaaaa 8402536  T
Q  955 atgagtttatcacaggttctttaaccaagaatgcaatatcatggatcttctattcactcattgactcggttagaataatgcacctttcacaagcaattat 1054  Q
     ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  8402535 -tgagtttatcacaggttctttaaccaagaatgcaatatcatggctcttctattcactcattgactcggttagaat---gcacctttcacaagcaattat 8402440  T
Q  1055 ttagaggcgacttaaagattacattggtggattagttaaatatnnnnnnnttagtaacgattttgccgacaattacctatagaggttaagacaaatgaaa 1154  Q
    |||||||||||||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||     
T  8402439 ttagaggcgacttacagattacattggtggattagttaaatataaaaaaattagtaacgattttgccgacaattacctatagaggtttagacaaatgaag 8402340  T
Q  1155 agtaggtgcttcacacctatactagaactggaagttgccaaaacagttgttggtggtttaaatttttacattagagaaaattggttgaccaacatcttgt 1254  Q
    |||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8402339 agtatgagcttcacacctatactaaaactggaagttgccaaaacagttgttggtggtttaaatttttacattagagaaaattggttgaccaacatcttgt 8402240  T
Q  1255 tgacttggcccaatttggagaaaaattggacaaatatcaacaacttggttgactttt 1311  Q
    |||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  8402239 tgacttagcccaatttggagaaaaattgaacaaatatcaacatcttggttgactttt 8402183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 67 - 776
Target Start/End: Complemental strand, 8429676 - 8428991
Alignment:
Q  67 acaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaagagaaagatttgaat 166  Q
    ||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||    
T  8429676 acaagttggtatgatgtttcagatgtatagaaactgtagtggattttttgagcttttggaagagacggttgaagaaactattgaagataaagatttgaat 8429577  T
Q  167 aaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatctgatgtctatc 266  Q
    ||||||||||| || || |||||||| ||||||||||| ||  |||||||||||||||||||||||||||||||  ||||||| ||||||| | ||||||    
T  8429576 aaaagagaaaacggggaagtgtttgaaatgaagattgctttaaaattgggaagaagtgtaatggagatgagagaatttgcctcgaaatctgctctctatc 8429477  T
Q  267 ggatggaaggacgtgagatcgatgaattcgccaacaagctcttctgaaaacaacatttttgttttaatttcttgtttgattcattctttacatatagatt 366  Q
    ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||        ||| |||||||||||||||||| ||||   |||    
T  8429476 ggatggaaggacgtgagatagatgaattcgccaacaaactcttctgaaaacaacatttt--------ttttttgtttgattcattcttttcatacgaatt 8429385  T
Q  367 ctttcgattattttgaaaataaataaagatgttgaacgtttgaggtgaaactcttacttaacacatgttagagaattgtataatgtactcccatttttct 466  Q
    ||||| ||||||||||    |||||||   ||||||||||||||| | ||||               |||||||||||||||||||||||||||||||||    
T  8429384 ctttcaattattttga----aaataaaaccgttgaacgtttgaggagtaact---------------ttagagaattgtataatgtactcccatttttct 8429304  T
Q  467 cataataaatacaatgggtacaaaaatgcttgatgaatatatattacaatgcttgatcaattttggccacctaga-----tggccagattgaaccaagtg 561  Q
     ||| ||||||||| |||||| | ||||||||  ||| ||| |  || ||||||||||  |||||||||||||||     ||| || |||||||||||||    
T  8429303 tatagtaaatacaacgggtacgataatgcttgtggaaaataca--acgatgcttgatctgttttggccacctagattaggtggtcacattgaaccaagtg 8429206  T
Q  562 ttgggcgttgacacaacccggacagggaaatattctccatgatatgaacaaaaatgatgtatcctctaattaacaaaaaatgtcatattca----catga 657  Q
    || ||| ||||||||||| ||| ||||||| | |||||| |||   ||| ||||| || ||||| |||||| || ||||||| ||||||||    |||||    
T  8429205 ttaggcattgacacaacctggatagggaaacactctccaggat---aac-aaaatcatttatcccctaattgacgaaaaatgccatattcatatgcatga 8429110  T
Q  658 atcttggaaatgttaatgagcaaaagggacaaatgaatagcggcatggttcaaacatagttctaaaatgataatgttgacgataaacattatattttgcc 757  Q
    ||||||| |||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||  ||| | |||  ||| ||||||  ||||||    
T  8429109 atcttgggaatgttaatgagcataggagacaaatgaatagcgacatggttcaaacatagttctaaaatgccaatctcgacattaaccattatcgtttgcc 8429010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 827 - 998
Target Start/End: Complemental strand, 8428796 - 8428626
Alignment:
Q  827 acatattgaagtcccaagaggcgctaaatatcccaaattacccatgttcataggggatattggggaatcgaccattgaatacattgcaaaattctccaca 926  Q
    |||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| | |||| || ||||||||||||||||||||    
T  8428796 acatgttgaagtcccaagaggcgctaaatatcccaaattggccatgttcataggggatattggggaatcaatcattaaacacattgcaaaattctccaca 8428697  T
Q  927 aaaatatgggaatttgcaatggttaaaaatgagtttatcacaggttctttaaccaagaatgcaatatcatgg 998  Q
    |||||||||||||||||||| ||| |||||||||||||| || |||||||||||||||||||| | ||||||    
T  8428696 aaaatatgggaatttgcaatagtt-aaaatgagtttatcccaagttctttaaccaagaatgcattctcatgg 8428626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 1204 - 1279
Target Start/End: Complemental strand, 8427991 - 8427915
Alignment:
Q  1204 ttggtggtttaaatttttacattagagaaaa-ttggttgaccaacatcttgttgacttggcccaatttggagaaaaa 1279  Q
    ||||||||||| ||||||||||||||||||| |||||  | ||||||||||||||||||| |||||| |||||||||    
T  8427991 ttggtggtttagatttttacattagagaaaaattggtcaatcaacatcttgttgacttggtccaattaggagaaaaa 8427915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 8376193 - 8376297
Alignment:
Q  151 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 250  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || |||||||||    
T  8376193 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcctca 8376292  T
Q  251 aaatc 255  Q
    |||||    
T  8376293 aaatc 8376297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 8368183 - 8368104
Alignment:
Q  32 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 111  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8368183 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8368104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 8401227 - 8401306
Alignment:
Q  32 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 111  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8401227 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8401306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 32 - 111
Target Start/End: Original strand, 8422804 - 8422883
Alignment:
Q  32 ttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggatt 111  Q
    ||||| |||| ||||||| ||||||||||||| ||||||||||||||||| | ||| |||||||||   |||||||||||    
T  8422804 ttggctactgctgttaattcttttgagcatggtggacaagttggtatggtttctgaaatgtatagagcttgtggtggatt 8422883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 8411921 - 8411867
Alignment:
Q  43 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 97  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8411921 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8411867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 8434019 - 8433965
Alignment:
Q  43 tgttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 97  Q
    ||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8434019 tgttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8433965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Original strand, 8376087 - 8376139
Alignment:
Q  45 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 97  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8376087 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8376139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 8395879 - 8395983
Alignment:
Q  151 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 250  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || ||||| |||    
T  8395879 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatca 8395978  T
Q  251 aaatc 255  Q
    |||||    
T  8395979 aaatc 8395983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 8405693 - 8405589
Alignment:
Q  151 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 250  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || ||||| |||    
T  8405693 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatctgagctgagggaacttgcatca 8405594  T
Q  251 aaatc 255  Q
    |||||    
T  8405593 aaatc 8405589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 8431070 - 8431018
Alignment:
Q  45 ttaatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 97  Q
    ||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||    
T  8431070 ttaatacttttgagcatggtggacaagttggcatggtttttgaaatgtataga 8431018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 8430964 - 8430889
Alignment:
Q  151 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgta 226  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| |||||||| || ||||||||||||| |||||||    
T  8430964 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaagatggctttgcaattgggaaaaagtgta 8430889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 88
Target Start/End: Original strand, 8459649 - 8459708
Alignment:
Q  29 gctttggcaactgttgttaatacttttgagcatggaggacaagttggtatggtgtttgag 88  Q
    |||||||||||||||||||| || || || |||||||| |||||||||||||| ||||||    
T  8459649 gctttggcaactgttgttaacacattagaacatggagggcaagttggtatggtttttgag 8459708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Complemental strand, 8417001 - 8416952
Alignment:
Q  44 gttaatacttttgagcatggaggacaagttggtatggtgtttgagatgta 93  Q
    |||||||||||||||||||| ||||||||||| ||||| ||||| |||||    
T  8417001 gttaatacttttgagcatggtggacaagttggcatggtttttgaaatgta 8416952  T

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Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 8411813 - 8411709
Alignment:
Q  151 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 250  Q
    ||||||||||||  | |||||||||||||| ||| | |||||  |||| || || |||| ||||||||||||||| |  ||| |||| || |||||||||    
T  8411813 agagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctca 8411714  T
Q  251 aaatc 255  Q
    |||||    
T  8411713 aaatc 8411709  T

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Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000008
Query Start/End: Original strand, 151 - 255
Target Start/End: Complemental strand, 8433911 - 8433807
Alignment:
Q  151 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 250  Q
    ||||||||||||  | |||||||||||||| ||| | |||||  |||| || || |||| ||||||||||||||| |  ||| |||| || |||||||||    
T  8433911 agagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctca 8433812  T
Q  251 aaatc 255  Q
    |||||    
T  8433811 aaatc 8433807  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 8416897 - 8416822
Alignment:
Q  151 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgta 226  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||| ||||    
T  8416897 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaaatgta 8416822  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 1108 - 1147
Target Start/End: Complemental strand, 8428047 - 8428008
Alignment:
Q  1108 gtaacgattttgccgacaattacctatagaggttaagaca 1147  Q
    |||||||||||||||||||||||||||| ||||| |||||    
T  8428047 gtaacgattttgccgacaattacctataaaggtttagaca 8428008  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 8405797 - 8405747
Alignment:
Q  47 aatacttttgagcatggaggacaagttggtatggtgtttgagatgtataga 97  Q
    ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||||    
T  8405797 aatacttttgaacatggtggacaagttggcatggtttttgaaatgtataga 8405747  T

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Target: chr4 (Bit Score: 66; Significance: 2e-28; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 2e-28
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 55336151 - 55335978
Alignment:
Q  52 ttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaa 151  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| || | || | |||||   |||||   ||  ||||     
T  55336151 ttttgagcatggtggacaagttggtatggtgtttgaaatgtatagaaactgtggtggattttttaagatgtttggagagagtattgaaagcacacttgag 55336052  T
Q  152 gagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgt 225  Q
    |||||||||||| | |||||||||||||||||| | ||||| ||||| || ||||||   || |||||||||||    
T  55336051 gagaaagatttggaaaaaagagaaaatggtgagatatttgaaatgaaaatggcattgatgttaggaagaagtgt 55335978  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 51 - 255
Target Start/End: Complemental strand, 55330720 - 55330516
Alignment:
Q  51 cttttgagcatggaggacaagttggtatggtgtttgagatgtatagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattga 150  Q
    ||||||| ||||| |||||| |||||||||| ||||| ||||||||||| |||||||||||  || |||| ||||||||||| |||||  ||||  | ||    
T  55330720 cttttgaacatggtggacaaattggtatggtatttgaaatgtatagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattgga 55330621  T
Q  151 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 250  Q
    ||||||||||||  | |  ||||||||||| ||| | ||||| ||||| || || |||   |||||||||| |||    ||||||||||||||||| |||    
T  55330620 agagaaagattttgagatgagagaaaatggagagttatttgaaatgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttgcttca 55330521  T
Q  251 aaatc 255  Q
    |||||    
T  55330520 aaatc 55330516  T

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Target: scaffold1738 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1738
Description:

Target: scaffold1738; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 255
Target Start/End: Original strand, 25 - 129
Alignment:
Q  151 agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca 250  Q
    ||||||||||||  | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||||||||   ||| |||| || ||||| |||    
T  25 agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatca 124  T
Q  251 aaatc 255  Q
    |||||    
T  125 aaatc 129  T

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