View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_low_12 (Length: 520)
Name: NF13764_low_12
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 43 - 311
Target Start/End: Original strand, 813219 - 813488
Alignment:
| Q |
43 |
aaatgaacgtcaaaatcctagtaattgacacatacatacatatttcaaactccaaatttcacggaagaaatagtaaaatcttatgcaatcttctt-gtta |
141 |
Q |
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| T |
813219 |
aaatgaacgtcaaaatcctagtaattgacacatacatacatatttcaaactccaaatttcatggaagaaatagtaaaatcttatgcaatcttctttgtta |
813318 |
T |
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| Q |
142 |
tttatcnnnnnnnnnnnnnnnnnnctctgcaacaaaacgaacttagcccatgtcaaagaaagaagaaagaatccacccaccatattcatgaattctaaag |
241 |
Q |
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| T |
813319 |
ttcatcaaaaaaaaaaaaaaaaaactctgcaacaaaacgaacttagcccatgtcaaagaaagaagaaagaatccacccaccatattcatgaattctaaag |
813418 |
T |
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| Q |
242 |
ctcaaaatttctttacctacatacacgtgacactcaagtaatcaaacccatcatcacataaaattaaaat |
311 |
Q |
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| T |
813419 |
ctcaaaatttctttacctacatacacgtgacactcaagtaatcaaacccatcatcacataaaattaaaat |
813488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 377 - 432
Target Start/End: Original strand, 813551 - 813606
Alignment:
| Q |
377 |
tgtaacctccaacctcttctctcttatcactttcctacttttcctctctcaaataa |
432 |
Q |
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| T |
813551 |
tgtaacctccaacctcttctctcttatcactttcctacttttcctctctcaaataa |
813606 |
T |
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