View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_low_16 (Length: 464)
Name: NF13764_low_16
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 10 - 447
Target Start/End: Complemental strand, 47186164 - 47185727
Alignment:
| Q |
10 |
aagaaaattccaaacttaaggtggcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccag |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47186164 |
aagaaaattccaaacttaaggtggcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccag |
47186065 |
T |
|
| Q |
110 |
ctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgggcataccataaccac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47186064 |
ctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccac |
47185965 |
T |
|
| Q |
210 |
caccaacattgcatagcctttgcttaagctatctgagtgatctgtgactttcatcccaagcactacgccgattacaacttgcgacacaaacatttgtaca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47185964 |
caccaacattgcatagcctttgcttaagctatctgagtgatctgtgactttcatcccaagcactacgccgattacaacttgcgacacaaacatttgtaca |
47185865 |
T |
|
| Q |
310 |
catgcttccaatagaagtacctttctcccaactttgtccacaaaatatacagacactaaggtgcagaggacattcacacctcctgtgatcactgatgagt |
409 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47185864 |
catgcttccaatagaagtacccttctcccaactttgtccacaaaatatacagacactaaggtgcagaggacattcacacctcctgtgatcactgatgagt |
47185765 |
T |
|
| Q |
410 |
aaagtgaagcatcattgtgaaatcccaaagtgttgaac |
447 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
47185764 |
aaagtgaagcatcattgtgaaatcccaaagtgttgaac |
47185727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 33 - 447
Target Start/End: Complemental strand, 47198680 - 47198266
Alignment:
| Q |
33 |
gcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
132 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47198680 |
gcacaacagggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccagctgatctagtctccaaaggaaat |
47198581 |
T |
|
| Q |
133 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgggcataccataaccaccaccaacattgcatagcctttgc |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
47198580 |
gtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgtgcataccataaccaccaccaacattgcatagcctttgc |
47198481 |
T |
|
| Q |
233 |
ttaagctatctgagtgatctgtgactttcatcccaagcactacgccgattacaacttgcgacacaaacatttgtacacatgcttccaatagaagtacctt |
332 |
Q |
| |
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|||||||||||||||||||| || ||| ||||||||||| ||| ||||||||||| |||||||||||||| |||||||||||||||| || ||| | |
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| T |
47198480 |
ttaagctatctgagtgatcttggagtttagccccaagcactatgccaattacaacttgggacacaaacatttgcacacatgcttccaataagagcaccct |
47198381 |
T |
|
| Q |
333 |
tctcccaactttgtccacaaaatatacagacactaaggtgcagaggacattcacacctcctgtgatcactgatgagtaaagtgaagcatcattgtgaaat |
432 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47198380 |
tctcccagctttgtccacaaaatatacagacactaaagtgcataggacattcacacctcctgtgatcactgatgagtaaagtgaagcatcattgtgaaat |
47198281 |
T |
|
| Q |
433 |
cccaaagtgttgaac |
447 |
Q |
| |
|
|||| |||| ||||| |
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|
| T |
47198280 |
cccagagtgctgaac |
47198266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 179
Target Start/End: Complemental strand, 47212705 - 47212623
Alignment:
| Q |
97 |
acactttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
179 |
Q |
| |
|
||||||||||| || || | |||||| | |||||| ||||||| ||||| | |||| ||||||||||||||||||||||||| |
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|
| T |
47212705 |
acactttgtcctgcagaacgagtctctagtggaaatatctcacttggaataagccaagcaagtggaccccatgaccatgcaaa |
47212623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 748499 - 748668
Alignment:
| Q |
10 |
aagaaaattccaaacttaaggtggcacaacatggacaagaaagcttgagcaataagaaaagtgaacaacatgtttgtaaacacagtcacactttgtccag |
109 |
Q |
| |
|
||||| ||||||||||| | |||||| ||||| || | ||||| |||||||| | ||| |||||||||||||| | | || || ||||||||||||| |
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| T |
748499 |
aagaagattccaaacttgaagtggcataacatagatagaaaagcctgagcaatgacaaaggtgaacaacatgttgacacaaactgtgacactttgtccag |
748598 |
T |
|
| Q |
110 |
ctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
179 |
Q |
| |
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|||||| |||||| | |||||||||||||| ||||| | |||||| || |||||||| ||||| ||||| |
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|
| T |
748599 |
ctgatcgagtctcgagtggaaatgtctcacttggaataagccaaccgagaggaccccaagaccaagcaaa |
748668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 41414049 - 41414153
Alignment:
| Q |
127 |
ggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgggcataccataaccaccaccaacattgcatagc |
226 |
Q |
| |
|
|||||| ||||||| |||||| ||||||||| ||||||||||||||| | || | | |||||||| |||| |||| ||| || ||||| |||| ||||| |
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| T |
41414049 |
ggaaatatctcacttggaattgtccaaccaagaggaccccatgaccatccgaacgctacaacaaataggcaaaccacaactacaaccaatattgaatagc |
41414148 |
T |
|
| Q |
227 |
ctttg |
231 |
Q |
| |
|
||||| |
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|
| T |
41414149 |
ctttg |
41414153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 179
Target Start/End: Complemental strand, 1356896 - 1356817
Alignment:
| Q |
100 |
ctttgtccagctgatctagtctccaaaggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
179 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||| ||||||| || | ||||||||| ||||||||||| |||||| |||| |
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| T |
1356896 |
ctttgtccagctgatctaatctccaatggaaaaatctcacttggtactaaccaacctagtggaccccacgaccatccaaa |
1356817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 36293576 - 36293679
Alignment:
| Q |
127 |
ggaaatgtctcactaggaattaaccaaccaagtggaccccatgaccatgcaaaagatgcaacaaatgggcataccataaccaccaccaacattgcatagc |
226 |
Q |
| |
|
|||||| ||||||| |||| | |||||||||||| ||||| |||||| |||| | | |||||||| |||| |||| ||| || ||||| |||| ||||| |
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|
| T |
36293576 |
ggaaatatctcacttggaactgtccaaccaagtgggccccacgaccatccaaatgctacaacaaataggcaaaccacaactacaaccaatattgaatagc |
36293675 |
T |
|
| Q |
227 |
cttt |
230 |
Q |
| |
|
|||| |
|
|
| T |
36293676 |
cttt |
36293679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 179
Target Start/End: Complemental strand, 36202747 - 36202702
Alignment:
| Q |
134 |
tctcactaggaattaaccaaccaagtggaccccatgaccatgcaaa |
179 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
36202747 |
tctcactaggaaccaaccaaccaagaggaccccatgaccaagcaaa |
36202702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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