View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13764_low_17 (Length: 460)
Name: NF13764_low_17
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 22 - 407
Target Start/End: Complemental strand, 33856250 - 33855849
Alignment:
| Q |
22 |
gctaaactgcgctggccgaagcggtatcaggagaaggtataattctctttctttcgttttcttgtttacaaagaattgctgaatgattgaaatttggaca |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33856250 |
gctaaactgcgctggccgaagcggtatcaggagaaggtatacttctctttctttcgttttcttgtttacaaagaactgctgaatgattgaaatttggaca |
33856151 |
T |
|
| Q |
122 |
tgatgtg-------------ctatttgtattttgtaaatgttgtagaatacgatgaattgaataagtgtcaatgtatatgtttatgttgaaattgaatct |
208 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
33856150 |
tgatgtgtgaaaatggtatcctatttgtattttgtaaatgttgtagaatacgatgaattgaataagtgtcgatgtatatgtttatgttggaattgaatct |
33856051 |
T |
|
| Q |
209 |
atcttagagatataataaaaatagaatagattttgtatagtttgattttgacagaaagattttgtatatttataagtcaatttgatatgaaactgaatga |
308 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33856050 |
atcttagagatataataaaaataaaatagattttgtatagtttgaatttgacagaaagattttgtatatttataagtcaatttgatatgaaactgaatga |
33855951 |
T |
|
| Q |
309 |
aagattaaagaattgctaattttctatctatgtagacaaacatgga---catacatgacactcacattcacatgttgatgcaataaattgtagaaatgag |
405 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33855950 |
aagattaaagaattgttaattttctatctatgtagacaaacatggacatcatacatgacactcacattcacatgttgatgcaataaattgtagaaatgag |
33855851 |
T |
|
| Q |
406 |
aa |
407 |
Q |
| |
|
|| |
|
|
| T |
33855850 |
aa |
33855849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 380
Target Start/End: Complemental strand, 33855635 - 33855436
Alignment:
| Q |
186 |
atgtttatgttgaaattgaatctatcttagagatataataaaaatagaatagattttgtatag-tttgattttgacagaaagattttgtatatttataag |
284 |
Q |
| |
|
|||| ||| |||||||||||| ||| |||| |||||||||||||| |||| ||||||||||| ||| ||||||||||||||| |||| | ||| ||| |
|
|
| T |
33855635 |
atgtatatattgaaattgaatatattgtagaaatataataaaaataaaatatattttgtatagtttttcttttgacagaaagatattgtgaagttaaaag |
33855536 |
T |
|
| Q |
285 |
tcaatttgatatg-aaactgaatgaaagattaaagaattgctaattttctatctatgtagacaaacatggaca---tacatgacactcacattcacatgt |
380 |
Q |
| |
|
||||||||||||| || || |||| |||| ||||||||| ||||||||||| | || ||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
33855535 |
tcaatttgatatgcaacctaaatgcaagaataaagaattcttaattttctatgtgtgaagacaaacatggacattgtacatgacacttacattcacatgt |
33855436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 406 - 460
Target Start/End: Complemental strand, 33855869 - 33855815
Alignment:
| Q |
406 |
aataaattgtagaaatgagtaagataaattgaatcacatgtgcatgtttgttcta |
460 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
33855869 |
aataaattgtagaaatgagaaagataaattgaatcacatgtgcgtatttgttcta |
33855815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 28214144 - 28214181
Alignment:
| Q |
21 |
ggctaaactgcgctggccgaagcggtatcaggagaagg |
58 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
28214144 |
ggctaaactgcgctggccgaaacggtatctggagaagg |
28214181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University