View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13764_low_23 (Length: 381)
Name: NF13764_low_23
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 361
Target Start/End: Complemental strand, 5897831 - 5897482
Alignment:
| Q |
14 |
agagtggggctaaaaataataacaatcaaatgttcagtcgaccatttattgtttataacaatcactaaacgcttgaagattacatttcttattagnnnnn |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5897831 |
agagtggggctaaaaataataacaatcaaatgttcagtcgaccatttattgtttataacaatcactacacgcttgaagattacatttcttattagaaaaa |
5897732 |
T |
|
| Q |
114 |
nnnnnnnnnnnngattacatcactaattaggatattggtgggggcaca--gtgactctgcaaaagattcttaggataaactggannnnnnngagatctta |
211 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
5897731 |
agaaaagaaaaagattacatctctaattaggatattggtgggggcacaaagtgactctgcaaaagattcttaggatacactggatttttttgagatctta |
5897632 |
T |
|
| Q |
212 |
aaactcatgctcaacttgttctccaattttacaaaaaatttggtctactacagctttcaagagtttaaccataaaaatcaagatttcctcactataatat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5897631 |
aaactcatgctcaacttgttctccaattttacaaaaaatttgttctactacagctttcaagagtttaaccataaaaatcaagatttcctcactataatat |
5897532 |
T |
|
| Q |
312 |
aacaatttatcagtgtcacgtttacaaatgccgccttctagcaaaactgt |
361 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5897531 |
aacaagttatcagtgtcacgtttacaaatgccgccttctagcaaaactgt |
5897482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University