View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13764_low_25 (Length: 373)

Name: NF13764_low_25
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13764_low_25
NF13764_low_25
[»] chr2 (26 HSPs)
chr2 (18-120)||(26163838-26163944)
chr2 (297-362)||(29508770-29508835)
chr2 (296-359)||(32545866-32545929)
chr2 (297-363)||(6217217-6217283)
chr2 (297-359)||(14470589-14470651)
chr2 (312-362)||(16514418-16514468)
chr2 (297-359)||(16514503-16514565)
chr2 (297-359)||(38933666-38933728)
chr2 (297-359)||(37961785-37961847)
chr2 (297-354)||(9173060-9173117)
chr2 (297-354)||(14229355-14229412)
chr2 (300-359)||(6722033-6722092)
chr2 (297-352)||(33018624-33018679)
chr2 (297-359)||(24115999-24116061)
chr2 (306-360)||(30610264-30610317)
chr2 (310-359)||(29508687-29508736)
chr2 (329-365)||(15011382-15011418)
chr2 (307-359)||(24115917-24115969)
chr2 (307-357)||(14892349-14892399)
chr2 (297-330)||(2828663-2828696)
chr2 (219-256)||(26052938-26052975)
chr2 (297-337)||(6721970-6722010)
chr2 (297-329)||(15011359-15011391)
chr2 (322-362)||(37632985-37633025)
chr2 (297-329)||(37762028-37762060)
chr2 (306-338)||(39819081-39819113)
[»] chr8 (20 HSPs)
chr8 (297-367)||(35441048-35441118)
chr8 (297-362)||(2581819-2581884)
chr8 (297-362)||(22649839-22649904)
chr8 (297-359)||(5033240-5033302)
chr8 (297-362)||(5033155-5033220)
chr8 (306-362)||(10086751-10086807)
chr8 (297-359)||(5667094-5667156)
chr8 (297-359)||(33841588-33841650)
chr8 (297-359)||(35440966-35441028)
chr8 (297-362)||(8243467-8243532)
chr8 (297-362)||(33841670-33841735)
chr8 (306-359)||(1880236-1880288)
chr8 (297-362)||(5667176-5667241)
chr8 (300-352)||(10086839-10086891)
chr8 (309-359)||(39851046-39851096)
chr8 (297-365)||(8796413-8796481)
chr8 (297-357)||(43844548-43844608)
chr8 (307-362)||(45191216-45191271)
chr8 (306-359)||(4958597-4958649)
chr8 (301-333)||(37618750-37618782)
[»] chr5 (25 HSPs)
chr5 (297-359)||(2953269-2953331)
chr5 (297-359)||(19655237-19655299)
chr5 (297-359)||(16971223-16971285)
chr5 (308-362)||(19655152-19655206)
chr5 (297-359)||(29699446-29699508)
chr5 (297-362)||(291091-291156)
chr5 (297-359)||(3899918-3899980)
chr5 (301-359)||(12913800-12913858)
chr5 (297-357)||(28818996-28819056)
chr5 (297-366)||(12913882-12913951)
chr5 (309-362)||(19598326-19598379)
chr5 (300-359)||(291179-291238)
chr5 (296-359)||(2356350-2356412)
chr5 (297-359)||(2093934-2093996)
chr5 (301-359)||(11983253-11983310)
chr5 (297-338)||(29699385-29699426)
chr5 (300-357)||(30117827-30117884)
chr5 (297-359)||(16439135-16439197)
chr5 (299-365)||(32485630-32485696)
chr5 (297-338)||(17849224-17849265)
chr5 (299-359)||(13312261-13312321)
chr5 (309-357)||(19272265-19272313)
chr5 (309-357)||(22082997-22083045)
chr5 (306-338)||(29385393-29385425)
chr5 (321-357)||(39777050-39777086)
[»] chr4 (25 HSPs)
chr4 (297-359)||(6271781-6271843)
chr4 (297-362)||(51265439-51265504)
chr4 (297-362)||(6271696-6271761)
chr4 (297-362)||(23444348-23444413)
chr4 (297-357)||(47661921-47661981)
chr4 (297-359)||(3862625-3862687)
chr4 (297-359)||(3871382-3871444)
chr4 (297-359)||(42375089-42375151)
chr4 (306-359)||(30709988-30710041)
chr4 (297-362)||(30861853-30861918)
chr4 (297-357)||(23444268-23444328)
chr4 (297-359)||(26186093-26186155)
chr4 (297-359)||(44379927-44379989)
chr4 (307-357)||(44380019-44380069)
chr4 (297-359)||(51265524-51265586)
chr4 (306-359)||(35682163-35682216)
chr4 (297-353)||(53954689-53954745)
chr4 (308-342)||(30861796-30861830)
chr4 (297-338)||(47661860-47661901)
chr4 (297-353)||(35682245-35682301)
chr4 (307-357)||(47762607-47762657)
chr4 (297-330)||(50384131-50384164)
chr4 (297-330)||(52028628-52028661)
chr4 (300-332)||(40789203-40789235)
chr4 (298-330)||(53954636-53954668)
[»] chr3 (19 HSPs)
chr3 (297-359)||(41753043-41753105)
chr3 (297-359)||(1801443-1801505)
chr3 (308-362)||(41752958-41753012)
chr3 (308-362)||(51046163-51046217)
chr3 (306-359)||(30734490-30734543)
chr3 (297-362)||(43139788-43139853)
chr3 (297-362)||(47492126-47492191)
chr3 (307-366)||(50524791-50524850)
chr3 (297-359)||(45103106-45103168)
chr3 (297-338)||(47492065-47492106)
chr3 (297-365)||(33689167-33689235)
chr3 (301-364)||(30580748-30580811)
chr3 (297-352)||(30580835-30580890)
chr3 (297-359)||(30734399-30734461)
chr3 (306-359)||(18321648-18321701)
chr3 (297-330)||(30476500-30476533)
chr3 (297-330)||(33689255-33689288)
chr3 (306-358)||(7977588-7977640)
chr3 (301-357)||(21024094-21024149)
[»] chr7 (19 HSPs)
chr7 (297-362)||(11016863-11016928)
chr7 (297-362)||(45231929-45231994)
chr7 (296-362)||(41018306-41018372)
chr7 (297-359)||(42628374-42628436)
chr7 (300-359)||(11016951-11017010)
chr7 (301-359)||(4290628-4290686)
chr7 (297-359)||(27028725-27028787)
chr7 (308-362)||(34854785-34854839)
chr7 (297-362)||(38975799-38975864)
chr7 (297-362)||(48000688-48000753)
chr7 (298-362)||(4290539-4290603)
chr7 (297-365)||(41945934-41946002)
chr7 (308-359)||(48000827-48000878)
chr7 (309-362)||(15027536-15027589)
chr7 (297-337)||(15027621-15027661)
chr7 (300-338)||(22764782-22764820)
chr7 (300-354)||(27028875-27028929)
chr7 (306-352)||(41945859-41945905)
chr7 (297-330)||(41018254-41018287)
[»] chr1 (27 HSPs)
chr1 (297-362)||(29179676-29179741)
chr1 (297-362)||(37155040-37155105)
chr1 (297-362)||(44706863-44706928)
chr1 (308-362)||(46931991-46932045)
chr1 (297-359)||(48993914-48993976)
chr1 (297-362)||(48993996-48994061)
chr1 (297-357)||(28395636-28395696)
chr1 (297-359)||(32540827-32540889)
chr1 (297-357)||(15220890-15220950)
chr1 (301-365)||(36290490-36290554)
chr1 (297-359)||(5995448-5995510)
chr1 (297-359)||(9157307-9157369)
chr1 (297-359)||(21630039-21630101)
chr1 (297-359)||(29179594-29179656)
chr1 (297-362)||(5995363-5995428)
chr1 (300-364)||(1091626-1091690)
chr1 (297-349)||(32540755-32540807)
chr1 (306-365)||(12441043-12441102)
chr1 (306-365)||(31342254-31342313)
chr1 (308-359)||(46932072-46932122)
chr1 (297-359)||(49444910-49444972)
chr1 (306-359)||(36381589-36381642)
chr1 (313-362)||(48498409-48498458)
chr1 (297-359)||(17127561-17127623)
chr1 (297-359)||(29371447-29371509)
chr1 (297-359)||(33219652-33219714)
chr1 (297-330)||(48823911-48823944)
[»] scaffold0586 (2 HSPs)
scaffold0586 (297-365)||(7126-7193)
scaffold0586 (297-353)||(7050-7106)
[»] scaffold0016 (1 HSPs)
scaffold0016 (297-359)||(49700-49762)
[»] scaffold0161 (2 HSPs)
scaffold0161 (297-362)||(27299-27364)
scaffold0161 (306-359)||(27217-27270)
[»] chr6 (11 HSPs)
chr6 (297-362)||(551244-551309)
chr6 (297-362)||(24975746-24975811)
chr6 (297-357)||(13043536-13043596)
chr6 (297-359)||(24587458-24587520)
chr6 (297-350)||(12343179-12343232)
chr6 (300-359)||(17750900-17750958)
chr6 (296-359)||(24618598-24618661)
chr6 (297-359)||(17750981-17751043)
chr6 (296-332)||(10521873-10521909)
chr6 (319-362)||(13043442-13043485)
chr6 (297-330)||(31654331-31654364)
[»] scaffold0047 (1 HSPs)
scaffold0047 (297-330)||(63836-63869)
[»] scaffold0180 (1 HSPs)
scaffold0180 (297-353)||(19125-19181)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 26163944 - 26163838
Alignment:
Q  18 aatgagcttatattgagaagctctgaagtgaactaatcaaattagagtgacc----aatagtgagacacagactaacttccagactgaaggtgtttaacc 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||| || |||||||||||||||    
T  26163944 aatgagcttatattgagaagctctgaagtgaactaatcaaattagagtgaccaattaatagtgagacacagactaacttcccgaatgaaggtgtttaacc 26163845  T
Q  114 aaactaa 120  Q
    |||||||    
T  26163844 aaactaa 26163838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 29508770 - 29508835
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||||| |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||    
T  29508770 aagcattgcggcattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagtatt 29508835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 296 - 359
Target Start/End: Original strand, 32545866 - 32545929
Alignment:
Q  296 taagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    ||||||||| |||||| ||||||||||||||||||||||||||| || ||||||||||||||||    
T  32545866 taagcattgtgacattatgattggccaatgtcaccaatgtcactaaactctatgtcacccaagt 32545929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 297 - 363
Target Start/End: Complemental strand, 6217283 - 6217217
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatta 363  Q
    |||||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||    
T  6217283 aagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagcatta 6217217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 14470651 - 14470589
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    ||||||||| ||||||||||||| |||||||||||||||||| ||| |||||||||| |||||    
T  14470651 aagcattgcaacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacacaagt 14470589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 16514468 - 16514418
Alignment:
Q  312 gtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  16514468 gtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatt 16514418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 16514503 - 16514565
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||| ||||||||||||| |||| ||| ||||||||||||||||    
T  16514503 aagcattgtgacattgtgattggtcaatgtcaccaatctcacccaactctatgtcacccaagt 16514565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 38933666 - 38933728
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||| ||||||||||| |||||||||||||| ||| ||||||||||||||||    
T  38933666 aagcattgtgacattatgattggccaacgtcaccaatgtcacccaactctatgtcacccaagt 38933728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 37961785 - 37961847
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| | |||||||||||| ||||||||| ||| |||||||| ||||||||||||||||    
T  37961785 aagcattgtggcattgtgattggtcaatgtcacaaatatcactcaactctatgtcacccaagt 37961847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Original strand, 9173060 - 9173117
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacc 354  Q
    |||||||| | ||||||||||||||||| ||||||||||||| ||| |||||||||||    
T  9173060 aagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatgtcacc 9173117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 354
Target Start/End: Complemental strand, 14229412 - 14229355
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacc 354  Q
    |||||||| ||||||||||||| |||||||||||||||||||  || |||||||||||    
T  14229412 aagcattgtgacattgtgattgaccaatgtcaccaatgtcaccgaactctatgtcacc 14229355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 6722033 - 6722092
Alignment:
Q  300 cattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    ||||| ||||||||||||||||||| |||| |||||||  ||| ||||||||||||||||    
T  6722033 cattgtgacattgtgattggccaatatcactaatgtcaaccaactctatgtcacccaagt 6722092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 33018624 - 33018679
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtca 352  Q
    |||||||| ||||||||||||| ||||| ||||||||||||| ||| |||||||||    
T  33018624 aagcattgtgacattgtgattgaccaatatcaccaatgtcacccaactctatgtca 33018679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 24115999 - 24116061
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||||||||||||||||| ||||| |||| |||| ||| ||| |||||||||| |||||    
T  24115999 aagcattgcgacattgtgattgaccaatatcactaatggcacccaactctatgtcacacaagt 24116061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 360
Target Start/End: Original strand, 30610264 - 30610317
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagta 360  Q
    |||||| || ||||||||||||||||||| ||| |||||||||||||||||||||    
T  30610264 gacattatggttggccaatgtcaccaatgccac-caattctatgtcacccaagta 30610317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 29508736 - 29508687
Alignment:
Q  310 ttgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||||| |||||||||||||||||| ||| ||||||||||| ||||    
T  29508736 ttgtgattggtcaatgtcaccaatgtcacccaactctatgtcacctaagt 29508687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 365
Target Start/End: Original strand, 15011382 - 15011418
Alignment:
Q  329 ccaatgtcactcaattctatgtcacccaagtattatc 365  Q
    |||||||||||||| ||||||||||||||||||||||    
T  15011382 ccaatgtcactcaactctatgtcacccaagtattatc 15011418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 359
Target Start/End: Complemental strand, 24115969 - 24115917
Alignment:
Q  307 acattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||||||||||||||| |||||||| |||||| ||||| |||| |||||    
T  24115969 acattgtgattggccaatgttaccaatgtgactcaactctatctcacacaagt 24115917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 14892349 - 14892399
Alignment:
Q  307 acattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaa 357  Q
    ||||||||||||  |||||||||||||||||  ||| ||||||||||||||    
T  14892349 acattgtgattgatcaatgtcaccaatgtcatccaactctatgtcacccaa 14892399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 2828663 - 2828696
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcacc 330  Q
    |||||||| |||||||||||||||||||||||||    
T  2828663 aagcattgtgacattgtgattggccaatgtcacc 2828696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 256
Target Start/End: Original strand, 26052938 - 26052975
Alignment:
Q  219 aacaggtattgatggattattttagggaaatgaactgc 256  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  26052938 aacaggtatggatggattattttagggaaacgaactgc 26052975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 6722010 - 6721970
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtca 337  Q
    |||||||| || ||||||||||| |||||||||||||||||    
T  6722010 aagcattgtgatattgtgattggtcaatgtcaccaatgtca 6721970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 15011359 - 15011391
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcac 329  Q
    |||||||| ||||||||||||||||||||||||    
T  15011359 aagcattgtgacattgtgattggccaatgtcac 15011391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 322 - 362
Target Start/End: Complemental strand, 37633025 - 37632985
Alignment:
Q  322 aatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||||||||||||  || |||||||||||||||||||    
T  37633025 aatgtcaccaatgtcaccaaactctatgtcacccaagtatt 37632985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 37762060 - 37762028
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcac 329  Q
    ||||||||||||||||||||||| |||||||||    
T  37762060 aagcattgcgacattgtgattggtcaatgtcac 37762028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 39819113 - 39819081
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcac 338  Q
    ||||||||| |||||||||||||||||||||||    
T  39819113 gacattgtggttggccaatgtcaccaatgtcac 39819081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 35441048 - 35441118
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtattatcta 367  Q
    |||||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||    
T  35441048 aagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttcta 35441118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 2581884 - 2581819
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  2581884 aagcattgtggcattgtgattggccaatgtcaacaatgtcacccaattctatgtcacccaagtatt 2581819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 22649904 - 22649839
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | |||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  22649904 aagcattgtggcattgtgattagccaatgtcaccaatgtcactcaactctatgtcacccaagtatt 22649839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 5033240 - 5033302
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||    
T  5033240 aagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 5033302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 5033220 - 5033155
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  5033220 aagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtatt 5033155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 10086807 - 10086751
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    ||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||    
T  10086807 gacattgtgattgaccaatgtcactaatgtcacccaattctatgtcacccaagtatt 10086751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 5667156 - 5667094
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| ||||||||||||| ||||||||||||||||||  ||| ||||||||||||||||    
T  5667156 aagcattgtgacattgtgattgaccaatgtcaccaatgtcatccaactctatgtcacccaagt 5667094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 33841650 - 33841588
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||| ||||||||| |||||||||||||||||| ||| ||||||||||||||||    
T  33841650 aagcattgtgacaatgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 33841588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 35441028 - 35440966
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||| |||| |||||||||||    
T  35441028 aagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 35440966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 8243467 - 8243532
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | ||||||||||| |||| |||||||||||||| ||| |||||||||||||||||||    
T  8243467 aagcattgtggcattgtgattgaccaacgtcaccaatgtcacccaactctatgtcacccaagtatt 8243532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 33841670 - 33841735
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | |||| ||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  33841670 aagcattgtggcattctgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtatt 33841735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 1880288 - 1880236
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||||||||| ||||||||||| |||||| ||||||||||||||||||||    
T  1880288 gacattgtgattggtcaatgtcaccagtgtcac-caattctatgtcacccaagt 1880236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 5667176 - 5667241
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||  |||||||| |||||||||||||||||||||||   || |||||||||||||||||||    
T  5667176 aagcattatgacattgtaattggccaatgtcaccaatgtcatcaaactctatgtcacccaagtatt 5667241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 352
Target Start/End: Original strand, 10086839 - 10086891
Alignment:
Q  300 cattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtca 352  Q
    ||||| |||||||||||||| |||||||||||||||||| ||| |||||||||    
T  10086839 cattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtca 10086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 39851046 - 39851096
Alignment:
Q  309 attgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    ||||||||||| |||||||||||||||||||||| | ||||||| ||||||    
T  39851046 attgtgattggtcaatgtcaccaatgtcactcaactttatgtcatccaagt 39851096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 8796481 - 8796413
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtattatc 365  Q
    |||||||| ||||||||||||| ||||| |||| ||| ||||  || |||||||||||||||| |||||    
T  8796481 aagcattgtgacattgtgattgaccaatatcacaaatatcacctaactctatgtcacccaagtgttatc 8796413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 43844548 - 43844608
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaa 357  Q
    |||||||| |||||||||||||  |||| ||||||||||||  ||| ||||||||||||||    
T  43844548 aagcattgtgacattgtgattgatcaatatcaccaatgtcatccaactctatgtcacccaa 43844608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 45191216 - 45191271
Alignment:
Q  307 acattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    ||||| ||||||| ||||||||||||| |||  ||| |||||||||||||||||||    
T  45191216 acattttgattggtcaatgtcaccaatatcatccaactctatgtcacccaagtatt 45191271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 4958649 - 4958597
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    ||||||||||||||||||||||| |||| ||||  ||||||||||||| |||||    
T  4958649 gacattgtgattggccaatgtcatcaatatcac-aaattctatgtcacacaagt 4958597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 333
Target Start/End: Complemental strand, 37618782 - 37618750
Alignment:
Q  301 attgcgacattgtgattggccaatgtcaccaat 333  Q
    |||| ||||||||||||||||||||||||||||    
T  37618782 attgtgacattgtgattggccaatgtcaccaat 37618750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 2953269 - 2953331
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  2953269 aagcattgtgacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 2953331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 19655237 - 19655299
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  19655237 aagcattgtgacattgtgattggacaatgtcaccaatgtcactcaactctatgtcacccaagt 19655299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 16971223 - 16971285
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||    
T  16971223 aagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 16971285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 308 - 362
Target Start/End: Complemental strand, 19655206 - 19655152
Alignment:
Q  308 cattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  19655206 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatt 19655152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 29699446 - 29699508
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||    
T  29699446 aagcattgtgacattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagt 29699508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 291156 - 291091
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | ||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||    
T  291156 aagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcactcaagtatt 291091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 3899918 - 3899980
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||| |||| |||||||||||    
T  3899918 aagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 3899980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 12913858 - 12913800
Alignment:
Q  301 attgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||| ||||||||||||||||||||||||||||||||||||| | |||||||| |||||    
T  12913858 attgtgacattgtgattggccaatgtcaccaatgtcactcaactatatgtcacacaagt 12913800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 28818996 - 28819056
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaa 357  Q
    |||||||| |||||| |||||| |||||||||||||| |||||||| ||||||||||||||    
T  28818996 aagcattgtgacattatgattgaccaatgtcaccaatatcactcaactctatgtcacccaa 28819056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 366
Target Start/End: Original strand, 12913882 - 12913951
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtattatct 366  Q
    |||||||  ||||||||||||| ||||| ||||||||||||| ||| |||||||||| ||| ||||||||    
T  12913882 aagcattatgacattgtgattgaccaatatcaccaatgtcacccaactctatgtcacacaaatattatct 12913951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 19598379 - 19598326
Alignment:
Q  309 attgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||||| |||||||||||||||| || ||| |||||||||||||||||||    
T  19598379 attgtgattgaccaatgtcaccaatgttacccaactctatgtcacccaagtatt 19598326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 291179 - 291238
Alignment:
Q  300 cattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    ||||| |||||||||||||  |||||||||||||||||| ||| ||||| ||||||||||    
T  291179 cattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatatcacccaagt 291238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 359
Target Start/End: Original strand, 2356350 - 2356412
Alignment:
Q  296 taagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    ||||||||| ||||| ||||||||||||||||||||||||||  ||| |||||||||| |||||    
T  2356350 taagcattgtgacat-gtgattggccaatgtcaccaatgtcatccaactctatgtcacacaagt 2356412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 2093996 - 2093934
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||  |||||||||||||  ||||||||||||| |||| ||| ||||||||||||||||    
T  2093996 aagcattatgacattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 2093934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 301 - 359
Target Start/End: Complemental strand, 11983310 - 11983253
Alignment:
Q  301 attgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||| |||||| |||||| |||||||||||||| |||| ||||||||||||||||||||    
T  11983310 attgtgacattttgattgaccaatgtcaccaatatcac-caattctatgtcacccaagt 11983253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 29699426 - 29699385
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcac 338  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  29699426 aagcattgtggcattgtgattggccaatgtcaccaatgtcac 29699385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 300 - 357
Target Start/End: Complemental strand, 30117884 - 30117827
Alignment:
Q  300 cattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaa 357  Q
    ||||| |||||||||||||| |||| ||||||||||||| ||| ||||| ||||||||    
T  30117884 cattgtgacattgtgattggtcaatatcaccaatgtcacccaactctatatcacccaa 30117827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 16439197 - 16439135
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| ||||||||||||| |||||||||||||| | || ||| ||||| ||| ||||||    
T  16439197 aagcattgtgacattgtgattgaccaatgtcaccaatattacccaactctatatcatccaagt 16439135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 365
Target Start/End: Original strand, 32485630 - 32485696
Alignment:
Q  299 gcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtattatc 365  Q
    |||||| || ||||||||||  |||||||||||||||||| ||| ||| |||||| ||||| |||||    
T  32485630 gcattgtgatattgtgattgatcaatgtcaccaatgtcacccaactctgtgtcacacaagtgttatc 32485696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 338
Target Start/End: Original strand, 17849224 - 17849265
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcac 338  Q
    ||||||||||| |||||||||| |||||||||||||| ||||    
T  17849224 aagcattgcgatattgtgattgaccaatgtcaccaatatcac 17849265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 359
Target Start/End: Complemental strand, 13312321 - 13312261
Alignment:
Q  299 gcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||| |||||||||||||  |||||||| |||||||||  || ||||||||||| ||||    
T  13312321 gcattgtgacattgtgattgatcaatgtcatcaatgtcacctaactctatgtcacctaagt 13312261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 19272313 - 19272265
Alignment:
Q  309 attgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaa 357  Q
    ||||||||||| |||| |||||||| |||||||| ||||||||| ||||    
T  19272313 attgtgattggtcaatttcaccaatatcactcaactctatgtcatccaa 19272265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 357
Target Start/End: Complemental strand, 22083045 - 22082997
Alignment:
Q  309 attgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaa 357  Q
    ||||||||||| ||||||||  |||||||| ||| ||||||||||||||    
T  22083045 attgtgattggtcaatgtcattaatgtcacacaactctatgtcacccaa 22082997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Original strand, 29385393 - 29385425
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcac 338  Q
    ||||||||| |||||||||||||||||||||||    
T  29385393 gacattgtggttggccaatgtcaccaatgtcac 29385425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 39777086 - 39777050
Alignment:
Q  321 caatgtcaccaatgtcactcaattctatgtcacccaa 357  Q
    |||||||||||||||||| ||| ||||||||||||||    
T  39777086 caatgtcaccaatgtcacccaactctatgtcacccaa 39777050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 6271781 - 6271843
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||    
T  6271781 aagcattgtgacattgtgattggccaatgtcaccaatatcactcaactctatgtcacccaagt 6271843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 51265504 - 51265439
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  51265504 aagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatt 51265439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 6271761 - 6271696
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | |||||||||||||||||||||||||| |||| ||| |||||||||||||||||||    
T  6271761 aagcattgtggcattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagtatt 6271696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 23444348 - 23444413
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | ||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  23444348 aagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaaatatt 23444413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 47661921 - 47661981
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaa 357  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||    
T  47661921 aagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaa 47661981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 3862625 - 3862687
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  3862625 aagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacctaagt 3862687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 3871382 - 3871444
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  3871382 aagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacctaagt 3871444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 42375089 - 42375151
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||  |||||||||||||||||| ||| ||||||||||||||||    
T  42375089 aagcattgtgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcacccaagt 42375151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 30709988 - 30710041
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||||||||||||||||||||||||||||  || ||||||||||||||||    
T  30709988 gacattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 30710041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 30861853 - 30861918
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | |||||||||||||||||||||||||| |||  ||| |||||||||||||||||||    
T  30861853 aagcattgtggcattgtgattggccaatgtcaccaatatcatccaactctatgtcacccaagtatt 30861918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 23444328 - 23444268
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaa 357  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||| ||||||| ||||||    
T  23444328 aagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgttacccaa 23444268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 26186093 - 26186155
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| || |||||||||||||||||||| |||||| || ||| ||||||||||||||||    
T  26186093 aagcattgtgaaattgtgattggccaatgtcatcaatgttacccaactctatgtcacccaagt 26186155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 44379989 - 44379927
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||| | ||||||||||||| |||||||||||||| ||||||||| ||||||    
T  44379989 aagcattgtgacattataattggccaatgtcgccaatgtcactcaactctatgtcatccaagt 44379927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 357
Target Start/End: Original strand, 44380019 - 44380069
Alignment:
Q  307 acattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaa 357  Q
    ||||||||||||| |||| ||||||||||||||||| ||||||||||||||    
T  44380019 acattgtgattggtcaatatcaccaatgtcactcaactctatgtcacccaa 44380069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 51265524 - 51265586
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||| ||||||| |||||||||||||||||| ||| |||| |||||||||||    
T  51265524 aagcattgtgacattatgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 51265586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 35682216 - 35682163
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||||||||||||||||||||||| ||||  || ||||||||||||||||    
T  35682216 gacattgtgattggccaatgtcaccaatatcacctaactctatgtcacccaagt 35682163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 53954689 - 53954745
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcac 353  Q
    |||||||| |||||||| ||||| |||||||||||||||||| ||| ||||||||||    
T  53954689 aagcattgtgacattgtaattggacaatgtcaccaatgtcacccaactctatgtcac 53954745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 308 - 342
Target Start/End: Complemental strand, 30861830 - 30861796
Alignment:
Q  308 cattgtgattggccaatgtcaccaatgtcactcaa 342  Q
    |||||||||||||||||||||||||||||||||||    
T  30861830 cattgtgattggccaatgtcaccaatgtcactcaa 30861796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 47661901 - 47661860
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcac 338  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  47661901 aagcattgtggcattgtgattggccaatgtcaccaatgtcac 47661860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 353
Target Start/End: Original strand, 35682245 - 35682301
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcac 353  Q
    |||||||| ||||||||||| || ||||||||||||||||||  || ||||||||||    
T  35682245 aagcattgtgacattgtgatcggtcaatgtcaccaatgtcacctaactctatgtcac 35682301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 47762657 - 47762607
Alignment:
Q  307 acattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaa 357  Q
    ||||||||||||| ||||||||| ||| |||||||  ||||||||||||||    
T  47762657 acattgtgattggtcaatgtcacaaatatcactcagctctatgtcacccaa 47762607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 50384164 - 50384131
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcacc 330  Q
    |||||||| |||||||||||||||||||||||||    
T  50384164 aagcattgtgacattgtgattggccaatgtcacc 50384131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 52028628 - 52028661
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcacc 330  Q
    |||||||| |||||||||||||||||||||||||    
T  52028628 aagcattgtgacattgtgattggccaatgtcacc 52028661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 332
Target Start/End: Complemental strand, 40789235 - 40789203
Alignment:
Q  300 cattgcgacattgtgattggccaatgtcaccaa 332  Q
    ||||| |||||||||||||||||||||||||||    
T  40789235 cattgtgacattgtgattggccaatgtcaccaa 40789203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 53954668 - 53954636
Alignment:
Q  298 agcattgcgacattgtgattggccaatgtcacc 330  Q
    ||||||| |||||||||||||||||||||||||    
T  53954668 agcattgtgacattgtgattggccaatgtcacc 53954636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 41753043 - 41753105
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41753043 aagcattgtggcattgtgattggccaatgtcaccaatgtcactcaactctatgtcacccaagt 41753105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 1801505 - 1801443
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| | ||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  1801505 aagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 1801443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 308 - 362
Target Start/End: Complemental strand, 41753012 - 41752958
Alignment:
Q  308 cattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  41753012 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatt 41752958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 308 - 362
Target Start/End: Original strand, 51046163 - 51046217
Alignment:
Q  308 cattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    ||||||||||||||||||||||||||||||  ||| |||||||||||||||||||    
T  51046163 cattgtgattggccaatgtcaccaatgtcatccaactctatgtcacccaagtatt 51046217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 306 - 359
Target Start/End: Original strand, 30734490 - 30734543
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||||||||||||||||||||||||||||  || ||||||||||||||||    
T  30734490 gacattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 30734543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 43139788 - 43139853
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | |||||| |||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  43139788 aagcattgtggcattgttattggccaatgtcaccaatgtcacccaactctatgtcacccaaatatt 43139853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 47492126 - 47492191
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| ||||||||||||||||||| | ||||||||||| ||| |||||||||||||| ||||    
T  47492126 aagcattgtgacattgtgattggccaatatgaccaatgtcacccaactctatgtcacccaactatt 47492191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 50524791 - 50524850
Alignment:
Q  307 acattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtattatct 366  Q
    |||||||||||| | ||| ||||||||||||||||| |||||||||||||||| ||||||    
T  50524791 acattgtgattgactaatatcaccaatgtcactcaactctatgtcacccaagtgttatct 50524850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 45103168 - 45103106
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||  |||| ||||||||||||| ||| ||||||||||||||||    
T  45103168 aagcattgtgacattgtgattgatcaatatcaccaatgtcacccaactctatgtcacccaagt 45103106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 338
Target Start/End: Complemental strand, 47492106 - 47492065
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcac 338  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  47492106 aagcattgtgacattgtgattggccaatgtcaccaatgtcac 47492065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 365
Target Start/End: Complemental strand, 33689235 - 33689167
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtattatc 365  Q
    |||||||| ||||||||||||| ||||| ||| ||||||||| ||| |||||||||| ||||| |||||    
T  33689235 aagcattgtgacattgtgattgaccaatatcatcaatgtcacccaactctatgtcacacaagtgttatc 33689167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 301 - 364
Target Start/End: Complemental strand, 30580811 - 30580748
Alignment:
Q  301 attgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtattat 364  Q
    |||| |||||| ||||||| |||| ||||||||||||| |||||||||||||| ||||| ||||    
T  30580811 attgtgacattatgattggtcaatatcaccaatgtcacccaattctatgtcactcaagtgttat 30580748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 30580835 - 30580890
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtca 352  Q
    ||||| || ||||||||||||| |||||||||| |||||||| |||||||||||||    
T  30580835 aagcactgtgacattgtgattgaccaatgtcacaaatgtcacccaattctatgtca 30580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 30734461 - 30734399
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| ||||||||||| || |||||||| |||||||||  || |||||||||| |||||    
T  30734461 aagcattgtgacattgtgatcggtcaatgtcatcaatgtcaccaaactctatgtcacacaagt 30734399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 18321701 - 18321648
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    ||||||||||||| |||||||||||||| |||| ||| |||||||  |||||||    
T  18321701 gacattgtgattgaccaatgtcaccaatatcacccaactctatgttgcccaagt 18321648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 30476533 - 30476500
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcacc 330  Q
    |||||||| |||||||||||||||||||||||||    
T  30476533 aagcattgtgacattgtgattggccaatgtcacc 30476500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 33689255 - 33689288
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcacc 330  Q
    |||||||| |||||||||||||||||||||||||    
T  33689255 aagcattgtgacattgtgattggccaatgtcacc 33689288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 358
Target Start/End: Original strand, 7977588 - 7977640
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaag 358  Q
    ||||||||| ||||||||| ||| ||||||||   ||||||||||||||||||    
T  7977588 gacattgtggttggccaatatcatcaatgtcatcaaattctatgtcacccaag 7977640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 301 - 357
Target Start/End: Complemental strand, 21024149 - 21024094
Alignment:
Q  301 attgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaa 357  Q
    |||| ||||||||| ||| |||||||||||||| ||| |||||| ||||||||||||    
T  21024149 attgtgacattgtgtttgaccaatgtcaccaatatca-tcaattttatgtcacccaa 21024094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 11016928 - 11016863
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  11016928 aagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatt 11016863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 45231929 - 45231994
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    ||||||||  |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  45231929 aagcattgtaacattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatt 45231994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 296 - 362
Target Start/End: Original strand, 41018306 - 41018372
Alignment:
Q  296 taagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    ||||||||| | |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  41018306 taagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtatt 41018372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 42628374 - 42628436
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| ||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||    
T  42628374 aagcattgggacattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaagt 42628436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 11016951 - 11017010
Alignment:
Q  300 cattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    ||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||    
T  11016951 cattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 11017010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 301 - 359
Target Start/End: Original strand, 4290628 - 4290686
Alignment:
Q  301 attgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||| ||||||||||||||||||||||||||||||||| ||| | ||||||||||||||    
T  4290628 attgtgacattgtgattggccaatgtcaccaatgtcacccaactgtatgtcacccaagt 4290686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 27028787 - 27028725
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||| | ||||||||| ||||    
T  27028787 aagcattgtgacattgtgattgtccaatgtcaccaatgtcactcaactatatgtcaccaaagt 27028725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 308 - 362
Target Start/End: Original strand, 34854785 - 34854839
Alignment:
Q  308 cattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    ||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  34854785 cattgtgattgaccaatgtcaccaatgtcacccaactctatgtcacccaagtatt 34854839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 38975864 - 38975799
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | ||||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||    
T  38975864 aagcattgtggcattgtgattgaccaatgttaccaatgtcacccaactctatgtcacccaagtatt 38975799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 48000753 - 48000688
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | |||||||||||  |||||||||||||||||| ||| || ||||||||||||||||    
T  48000753 aagcattgtggcattgtgattgatcaatgtcaccaatgtcacccaactcaatgtcacccaagtatt 48000688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 298 - 362
Target Start/End: Complemental strand, 4290603 - 4290539
Alignment:
Q  298 agcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    ||||||| | ||||||||||| ||||| |||||||| |||| ||| |||||||||||||||||||    
T  4290603 agcattgtggcattgtgattgaccaatatcaccaatatcacccaactctatgtcacccaagtatt 4290539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 41945934 - 41946002
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtattatc 365  Q
    ||||||||  |||||||||||| ||||| | ||||||||||||||| | |||||||||||||| |||||    
T  41945934 aagcattgtaacattgtgattgaccaatattaccaatgtcactcaactttatgtcacccaagtgttatc 41946002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 359
Target Start/End: Original strand, 48000827 - 48000878
Alignment:
Q  308 cattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||||||| |||||||||||||||||| ||| ||||||| ||||||||    
T  48000827 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtgacccaagt 48000878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 362
Target Start/End: Complemental strand, 15027589 - 15027536
Alignment:
Q  309 attgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    ||||||||||| |||||||||||||||||  ||| ||||||| |||||||||||    
T  15027589 attgtgattggtcaatgtcaccaatgtcaaacaactctatgttacccaagtatt 15027536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 15027621 - 15027661
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtca 337  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  15027621 aagcattgtgacattgtgattggtcaatgtcaccaatgtca 15027661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 338
Target Start/End: Original strand, 22764782 - 22764820
Alignment:
Q  300 cattgcgacattgtgattggccaatgtcaccaatgtcac 338  Q
    ||||| ||||||||||||||||||| |||||||||||||    
T  22764782 cattgtgacattgtgattggccaatatcaccaatgtcac 22764820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 354
Target Start/End: Original strand, 27028875 - 27028929
Alignment:
Q  300 cattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacc 354  Q
    ||||| ||||||||||||| |||||||||||||  |||| ||| |||||||||||    
T  27028875 cattgtgacattgtgattgaccaatgtcaccaacatcacccaagtctatgtcacc 27028929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 41945905 - 41945859
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcactcaattctatgtca 352  Q
    |||||| |||||| | ||||||| |||||||||||||||||||||||    
T  41945905 gacattatgattgactaatgtcatcaatgtcactcaattctatgtca 41945859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 41018287 - 41018254
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcacc 330  Q
    |||||||| |||||||||||||||||||||||||    
T  41018287 aagcattgggacattgtgattggccaatgtcacc 41018254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 29179676 - 29179741
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  29179676 aagcattgtggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatt 29179741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 37155105 - 37155040
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| |||||||||||||||||||||||||||||||||  || |||||||||||||||||||    
T  37155105 aagcattgtgacattgtgattggccaatgtcaccaatgtcaccaaactctatgtcacccaagtatt 37155040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 44706863 - 44706928
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||    
T  44706863 aagcattgcggcattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaaatatt 44706928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 308 - 362
Target Start/End: Complemental strand, 46932045 - 46931991
Alignment:
Q  308 cattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  46932045 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatt 46931991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 48993976 - 48993914
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||| ||||||||||||||||    
T  48993976 aagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 48993914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 48993996 - 48994061
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||    
T  48993996 aagcattgtggcattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtatt 48994061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 297 - 357
Target Start/End: Complemental strand, 28395696 - 28395636
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaa 357  Q
    |||||||| |||||||||||||| |||||||||||||||||||||| ||||||| ||||||    
T  28395696 aagcattgtgacattgtgattggtcaatgtcaccaatgtcactcaactctatgttacccaa 28395636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 32540827 - 32540889
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    ||||||||  ||||||||||||| |||||||||||||||||  ||||||||||||||||||||    
T  32540827 aagcattgtaacattgtgattggtcaatgtcaccaatgtcatccaattctatgtcacccaagt 32540889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 15220890 - 15220950
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaa 357  Q
    |||||||| || |||||||||||||||| ||||||||||||| ||| ||||||||||||||    
T  15220890 aagcattgtgagattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaa 15220950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 301 - 365
Target Start/End: Original strand, 36290490 - 36290554
Alignment:
Q  301 attgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtattatc 365  Q
    |||| |||||||||||||| ||||| |||||||||||| ||| ||||||||||||||||| ||||    
T  36290490 attgtgacattgtgattggtcaatgccaccaatgtcacccaactctatgtcacccaagtactatc 36290554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 5995448 - 5995510
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| | |||||||||||| |||||||||||||||||  ||| ||||||||||||||||    
T  5995448 aagcattgtggcattgtgattggtcaatgtcaccaatgtcatccaactctatgtcacccaagt 5995510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 9157369 - 9157307
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||| |||||| ||||||||||| ||| |||||||||| |||||    
T  9157369 aagcattgtgacattgtgattggtcaatgttaccaatgtcacccaactctatgtcacacaagt 9157307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 21630101 - 21630039
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||| |||||||||||||||||| ||| | |||||||| |||||    
T  21630101 aagcattgtgacattgtgattggtcaatgtcaccaatgtcacccaactttatgtcacgcaagt 21630039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 29179656 - 29179594
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||| || ||||||||||||||| ||| ||||||||| ||||||    
T  29179656 aagcattgtgacattgtgattggtcagtgtcaccaatgtcacccaactctatgtcatccaagt 29179594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 5995428 - 5995363
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | ||||||||||||||||||| ||||||||||   || |||||||||||||||||||    
T  5995428 aagcattgtggcattgtgattggccaatgttaccaatgtcatcaaactctatgtcacccaagtatt 5995363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 364
Target Start/End: Original strand, 1091626 - 1091690
Alignment:
Q  300 cattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtattat 364  Q
    ||||| |||||||||||||| ||| ||||||||| |||| ||| |||||||||||||||| ||||    
T  1091626 cattgtgacattgtgattggtcaaagtcaccaatatcacccaactctatgtcacccaagtgttat 1091690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 349
Target Start/End: Complemental strand, 32540807 - 32540755
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatg 349  Q
    |||||||| |||||||||||||||||||| |||||||||||| ||| ||||||    
T  32540807 aagcattgtgacattgtgattggccaatgccaccaatgtcacccaactctatg 32540755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 365
Target Start/End: Original strand, 12441043 - 12441102
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtattatc 365  Q
    |||||||||||| ||||||| ||||||||||||  |||||||||||| |||||| |||||    
T  12441043 gacattgtgattagccaatgccaccaatgtcaccaaattctatgtcatccaagtgttatc 12441102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 31342313 - 31342254
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtattatc 365  Q
    ||||||||||||||||||||||| |  |||||| ||| |||||||||||||||| |||||    
T  31342313 gacattgtgattggccaatgtcatcggtgtcacccaactctatgtcacccaagtgttatc 31342254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 359
Target Start/End: Original strand, 46932072 - 46932122
Alignment:
Q  308 cattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||||||| |||||||||||||||||| ||| ||||||||||||||||    
T  46932072 cattgtgattggtcaatgtcaccaatgtcac-caactctatgtcacccaagt 46932122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 49444972 - 49444910
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    ||||||||  ||||||||||||  | |||||||||||||||| ||| ||||||||||||||||    
T  49444972 aagcattgtaacattgtgattgatcgatgtcaccaatgtcacccaactctatgtcacccaagt 49444910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 36381642 - 36381589
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||||||||||||||||||||||| |||   |||||||||||| ||||||    
T  36381642 gacattgtgattggccaatgtcaccaatatcatcgaattctatgtcatccaagt 36381589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 48498458 - 48498409
Alignment:
Q  313 tgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||| |||||||||| |||||||| ||| |||||||||||||||||||    
T  48498458 tgattgaccaatgtcacaaatgtcacccaactctatgtcacccaagtatt 48498409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 17127623 - 17127561
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||| ||||||||| ||||||||  || ||||| |||| |||||    
T  17127623 aagcattgtgacattgtgattggtcaatgtcactaatgtcacctaactctatatcacacaagt 17127561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 29371447 - 29371509
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||| |||| |||||||||||||  |  |||||||||| |||||    
T  29371447 aagcattgtgacattgtgattggtcaatatcaccaatgtcacctagctctatgtcacacaagt 29371509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 33219652 - 33219714
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||  |||||||||||||  |||||||||||||||||  ||| ||||||| ||||||||    
T  33219652 aagcattatgacattgtgattgatcaatgtcaccaatgtcatccaactctatgttacccaagt 33219714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 48823944 - 48823911
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcacc 330  Q
    |||||||| |||||||||||||||||||||||||    
T  48823944 aagcattgtgacattgtgattggccaatgtcacc 48823911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 7126 - 7193
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtattatc 365  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |||||    
T  7126 aagcattgtgacattgtgattggccaatgtcaccaatgtcac-caactctatgtcacacaagtgttatc 7193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 7106 - 7050
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcac 353  Q
    |||||||| ||||||||||||||| ||| ||||||||||||| ||| ||||||||||    
T  7106 aagcattgtgacattgtgattggctaatatcaccaatgtcacccaactctatgtcac 7050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 49762 - 49700
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| |||||||||||||| |||||||| ||||||||| ||| ||||||||||||||||    
T  49762 aagcattgtgacattgtgattggtcaatgtcatcaatgtcacccaactctatgtcacccaagt 49700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 27299 - 27364
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | ||||||||||||||||| ||||||||||||| ||| ||||| |||||||||||||    
T  27299 aagcattgtggcattgtgattggccaatatcaccaatgtcacccaactctatatcacccaagtatt 27364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 306 - 359
Target Start/End: Complemental strand, 27270 - 27217
Alignment:
Q  306 gacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    ||||||||||||||||||| |||| |||||||| ||| ||||||||||||||||    
T  27270 gacattgtgattggccaatatcactaatgtcacccaactctatgtcacccaagt 27217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 362
Target Start/End: Original strand, 551244 - 551309
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | |||||||||||||||||||||||||| |||  |||||||||||||||||| ||||    
T  551244 aagcattgtggcattgtgattggccaatgtcaccaatatcatccaattctatgtcacccaaatatt 551309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 297 - 362
Target Start/End: Complemental strand, 24975811 - 24975746
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||||| | ||||||||||| ||||||||||||||||||  ||| |||||||||||||||||||    
T  24975811 aagcattgtggcattgtgattgaccaatgtcaccaatgtcagccaactctatgtcacccaagtatt 24975746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 297 - 357
Target Start/End: Original strand, 13043536 - 13043596
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaa 357  Q
    |||||||| || ||||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  13043536 aagcattgtgatattgtgattagccaatgtcaccaatatcactcaactctatgtcacccaa 13043596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 297 - 359
Target Start/End: Complemental strand, 24587520 - 24587458
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| ||||||||||||| |||||||||| |||||||| ||| ||||||||||| ||||    
T  24587520 aagcattgtgacattgtgattgaccaatgtcactaatgtcacccaactctatgtcacctaagt 24587458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 350
Target Start/End: Original strand, 12343179 - 12343232
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgt 350  Q
    |||||||| |||||||||||||||||||||||||||| |||| ||| |||||||    
T  12343179 aagcattgtgacattgtgattggccaatgtcaccaatctcacccaactctatgt 12343232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 300 - 359
Target Start/End: Complemental strand, 17750958 - 17750900
Alignment:
Q  300 cattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    ||||| ||||||||||||| |||||||||||||||||| |||| |||||||||| |||||    
T  17750958 cattgtgacattgtgattgaccaatgtcaccaatgtca-tcaactctatgtcacacaagt 17750900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 296 - 359
Target Start/End: Complemental strand, 24618661 - 24618598
Alignment:
Q  296 taagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    ||||||||  |||||||||||||  |||||||||||||||||| ||| |||||||||| |||||    
T  24618661 taagcattatgacattgtgattgatcaatgtcaccaatgtcacccaactctatgtcactcaagt 24618598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 359
Target Start/End: Original strand, 17750981 - 17751043
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcacccaagt 359  Q
    |||||||| ||||||||||| ||||||||||| |||| |||| ||| |||||||||| |||||    
T  17750981 aagcattgtgacattgtgatcggccaatgtcatcaatatcacccaactctatgtcacacaagt 17751043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 10521909 - 10521873
Alignment:
Q  296 taagcattgcgacattgtgattggccaatgtcaccaa 332  Q
    ||||||||| |||||||||||||||||||||||||||    
T  10521909 taagcattgtgacattgtgattggccaatgtcaccaa 10521873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 13043485 - 13043442
Alignment:
Q  319 gccaatgtcaccaatgtcactcaattctatgtcacccaagtatt 362  Q
    |||||| ||||||||||||| |||||||||||||||||| ||||    
T  13043485 gccaatatcaccaatgtcacccaattctatgtcacccaaatatt 13043442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Complemental strand, 31654364 - 31654331
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcacc 330  Q
    |||||||| |||||||||||||||||||||||||    
T  31654364 aagcattgtgacattgtgattggccaatgtcacc 31654331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 330
Target Start/End: Original strand, 63836 - 63869
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcacc 330  Q
    |||||||| |||||||||||||||||||||||||    
T  63836 aagcattgtgacattgtgattggccaatgtcacc 63869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 353
Target Start/End: Complemental strand, 19181 - 19125
Alignment:
Q  297 aagcattgcgacattgtgattggccaatgtcaccaatgtcactcaattctatgtcac 353  Q
    |||||||| |||||||||||||  |||| ||| ||||||||| ||| ||||||||||    
T  19181 aagcattgtgacattgtgattgatcaatatcatcaatgtcacccaactctatgtcac 19125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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