View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_low_29 (Length: 347)
Name: NF13764_low_29
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 51350170 - 51350495
Alignment:
| Q |
1 |
gacattgattttattagagctgcaaagtatagtttctgtcaaattcacagaagcacaccgcgattctatcaaactcacc-taaatgcgaatgtgcactca |
99 |
Q |
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| T |
51350170 |
gacattgattttattagagctgcaaagtatagtttctgtcaaattcacagaagcacaccgcgattctatcaaattcaccataaatgcgaatgtgcactca |
51350269 |
T |
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| Q |
100 |
tgatgatgatggtgaatatattactgcaattgtcaatttagcacagtagaatcttgatgcttgtagtaaaaacaaaattaataagatatctctgcattaa |
199 |
Q |
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| T |
51350270 |
tagtgat---ggtgaatatattactgcaattgtcaatttagcacagtagaatcttgatgcttgtagtaaaaacaaaattaataagatatctctgcattaa |
51350366 |
T |
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| Q |
200 |
ttgatatctaccacttgtgataatctatactggtatgctaataatgtagtactggtattattgaatataaaatagaaataactacatttactccaacctg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51350367 |
ttgatatctaccacttgtgataatctatactggtatgctaataatgtagtactggtattattgaatataaaatagaaataactacatttactccaacctg |
51350466 |
T |
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| Q |
300 |
aatttaaaattgaaattggagagacttat |
328 |
Q |
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|||||||||||||||||| |||||||||| |
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| T |
51350467 |
aatttaaaattgaaattgaagagacttat |
51350495 |
T |
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