View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13764_low_30 (Length: 336)
Name: NF13764_low_30
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_30 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 16471094 - 16470903
Alignment:
| Q |
1 |
acactgaaagctgtgaatgagagcaaattatttactgttatgtattgactagtttaaatcaatacatatttttgggcacaacaacgaatccttttgtcga |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16471094 |
acaccgaaagctgtgaatgagagcaaattatttactgttatgtattgaccagtttaagtcaatacatatttttgggcacaacaacgaatccttttgtcga |
16470995 |
T |
|
| Q |
101 |
catttttgtcatctaacaattttggacactttggttagttgaggtctaaaggatagaccatgcatgctatatttaaccaactccatttgctt |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16470994 |
catttttgtcatctaacaattttggacactttggttagttgaggtctaaaggatagaccatgcatgctatatttaaccaactccatttgctt |
16470903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 257 - 320
Target Start/End: Complemental strand, 16470760 - 16470697
Alignment:
| Q |
257 |
tatccttcaattttggaatttctaagtttttgtattcttgttttatgattgtgtgctattattt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
16470760 |
tatccttcaattttggaatttctaagtttttgtattcttgttttatgattgtgtactattattt |
16470697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University