View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13764_low_32 (Length: 329)

Name: NF13764_low_32
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13764_low_32
NF13764_low_32
[»] chr3 (1 HSPs)
chr3 (9-319)||(44479038-44479348)
[»] chr5 (1 HSPs)
chr5 (9-319)||(21974830-21975140)
[»] scaffold0018 (3 HSPs)
scaffold0018 (147-319)||(75854-76026)
scaffold0018 (147-319)||(76132-76304)
scaffold0018 (147-319)||(76410-76582)
[»] chr8 (2 HSPs)
chr8 (177-315)||(41770392-41770530)
chr8 (60-106)||(41770601-41770647)
[»] chr4 (2 HSPs)
chr4 (177-315)||(35599648-35599786)
chr4 (60-106)||(35599531-35599577)
[»] chr7 (4 HSPs)
chr7 (177-259)||(47736192-47736274)
chr7 (185-319)||(37876506-37876640)
chr7 (198-289)||(34796502-34796593)
chr7 (60-106)||(47736075-47736121)
[»] chr2 (2 HSPs)
chr2 (177-259)||(13648920-13649002)
chr2 (60-106)||(13649073-13649119)
[»] chr6 (1 HSPs)
chr6 (198-319)||(22369914-22370035)
[»] chr1 (1 HSPs)
chr1 (198-289)||(51017102-51017193)


Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 44479038 - 44479348
Alignment:
Q  9 gaaatgattggtggtgggcagagatttactgtggacatgaggnnnnnnncttgtagttgtaatttttgggagcttgtaggtataccttgcagacatgcta 108  Q
    ||||||||||||||||||||||||||||||||||||||| ||       ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  44479038 gaaatgattggtggtgggcagagatttactgtggacatggggaaaagaacttgtagttgtaatttttgggagctagtaggtataccttgcagacatgcta 44479137  T
Q  109 ttgttgcaatgtctaagatggatcaaaacccagagggctatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgc 208  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44479138 ttgttgcaatgtctaagacagaccaaaacccagagggctatgtttctgaatggtatactaggagcaagtatgaagcatgttataacttcaatgtgagtgc 44479237  T
Q  209 cataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaactaaggaggaga 308  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  44479238 tataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacatcaaaggaccaggaagacctaagaaactaaggaggaga 44479337  T
Q  309 gagcctgatga 319  Q
    |||||||||||    
T  44479338 gagcctgatga 44479348  T

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Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 9 - 319
Target Start/End: Complemental strand, 21975140 - 21974830
Alignment:
Q  9 gaaatgattggtggtgggcagagatttactgtggacatgaggnnnnnnncttgtagttgtaatttttgggagcttgtaggtataccttgcagacatgcta 108  Q
    ||||||||||||||||||||||||||||||||| ||||| ||       ||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21975140 gaaatgattggtggtgggcagagatttactgtgaacatggggaaaagaacttgtagttgtaatttttgggagctagtaggtataccttgcagacatgcta 21975041  T
Q  109 ttgttgcaatgtctaagatggatcaaaacccagagggctatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgc 208  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21975040 ttgttgcaatgtctaagacagaccaaaacccagagggctatgtttctgaatggtatactaggagcaagtatgaagcatgttataacttcaatgtgagtgc 21974941  T
Q  209 cataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaactaaggaggaga 308  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  21974940 tataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacatcaaaggaccaggaagacctaagaaactaaggaggaga 21974841  T
Q  309 gagcctgatga 319  Q
    |||||||||||    
T  21974840 gagcctgatga 21974830  T

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Target: scaffold0018 (Bit Score: 161; Significance: 8e-86; HSPs: 3)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 147 - 319
Target Start/End: Complemental strand, 76026 - 75854
Alignment:
Q  147 tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtg 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  76026 tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgctataaatggtcaagatatgtggcctgaagttaaatgtg 75927  T
Q  247 aggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatga 319  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75926 aggagatgcttcctcctttgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatga 75854  T

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Target: scaffold0018; HSP #2
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 147 - 319
Target Start/End: Complemental strand, 76304 - 76132
Alignment:
Q  147 tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtg 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  76304 tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgctataaatggtcaagatatgtggcctgaagttaaatgtg 76205  T
Q  247 aggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatga 319  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  76204 aggagatgcttcctcctttgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatga 76132  T

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Target: scaffold0018; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 147 - 319
Target Start/End: Complemental strand, 76582 - 76410
Alignment:
Q  147 tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtg 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  76582 tatgtttctgaatggtatactaggagcaagtatgaagcatgttataactttaatgtgagtgctataaatggtcaagatatgtggcctgaagttaaatgtg 76483  T
Q  247 aggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatga 319  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  76482 aggagatgcttcctcctttgtacaagaaaggaccaggaagacctaagaaactaaggaggagagagcctgatga 76410  T

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Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 41770530 - 41770392
Alignment:
Q  177 tatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaag 276  Q
    |||||||||||||| |||  ||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||  | || || ||||    
T  41770530 tatgaagcatgttacaaccataatgtgagtgccattaatgggcaagatatgtggcctgaggtggaatgtgaggagatgcttccaccaatttataaaaaag 41770431  T
Q  277 gaccaggaagacctaagaaactaaggaggagagagcctg 315  Q
    | || || ||||| ||||| || |||||||| |||||||    
T  41770430 ggcctgggagaccaaagaagctgaggaggagggagcctg 41770392  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 41770647 - 41770601
Alignment:
Q  60 tgtagttgtaatttttgggagcttgtaggtataccttgcagacatgc 106  Q
    ||||||||||||||||||||| | |||||||||||||| || |||||    
T  41770647 tgtagttgtaatttttgggagttggtaggtataccttgtaggcatgc 41770601  T

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Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 35599648 - 35599786
Alignment:
Q  177 tatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaag 276  Q
    |||||||||||||| |||  ||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||| ||  | || || ||||    
T  35599648 tatgaagcatgttacaaccataatgtgagtgccattaatgggcaagatatgtggcctgaggtggaatgtgaggagatgcttccaccaatttataaaaaag 35599747  T
Q  277 gaccaggaagacctaagaaactaaggaggagagagcctg 315  Q
    | || || ||||| ||||| || |||||||| |||||||    
T  35599748 ggcctgggagaccaaagaagctgaggaggagggagcctg 35599786  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 35599531 - 35599577
Alignment:
Q  60 tgtagttgtaatttttgggagcttgtaggtataccttgcagacatgc 106  Q
    ||||||||||||||||||||| | |||||||||||||| || |||||    
T  35599531 tgtagttgtaatttttgggagttggtaggtataccttgtaggcatgc 35599577  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 259
Target Start/End: Original strand, 47736192 - 47736274
Alignment:
Q  177 tatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcc 259  Q
    |||||||||||| | |||  ||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||    
T  47736192 tatgaagcatgtaacaaccataatgtgagtgccattaatggacaagatatgtggcctgaggtggaatgtgaggagatgcttcc 47736274  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 319
Target Start/End: Original strand, 37876506 - 37876640
Alignment:
Q  185 atgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccagga 284  Q
    |||||||| ||||||||| ||||| || ||||| ||||| ||||||||  | ||||||   || || |||||||||||    ||||||||||| ||||||    
T  37876506 atgttatagctttaatgttagtgcaatcaatggacaagacatgtggccaaatgttgaagtggaagatatgcttcctccaacctacaagaaaggtccagga 37876605  T
Q  285 agacctaagaaactaaggaggagagagcctgatga 319  Q
    ||||| ||||| ||||| ||||| || ||||||||    
T  37876606 agaccaaagaagctaagaaggagggaacctgatga 37876640  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 289
Target Start/End: Complemental strand, 34796593 - 34796502
Alignment:
Q  198 aatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccaggaagacc 289  Q
    ||||| ||||| || ||||||||||| |||||||| || ||||||||||||||| || | |||||||  || || || || |||||||||||    
T  34796593 aatgtaagtgctatcaatggtcaagacatgtggccagaggttgaatgtgaggagttgttacctcctgcttataaaaagggtccaggaagacc 34796502  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Original strand, 47736075 - 47736121
Alignment:
Q  60 tgtagttgtaatttttgggagcttgtaggtataccttgcagacatgc 106  Q
    ||||||||||||||||||||| | |||||||||||||| || |||||    
T  47736075 tgtagttgtaatttttgggagttggtaggtataccttgtaggcatgc 47736121  T

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Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 13649002 - 13648920
Alignment:
Q  177 tatgaagcatgttataactttaatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcc 259  Q
    |||||||||||| | |||  ||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||    
T  13649002 tatgaagcatgtaacaaccataatgtgagtgccattaatggacaagatatgtggcctgaggtggaatgtgaggagatgcttcc 13648920  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 106
Target Start/End: Complemental strand, 13649119 - 13649073
Alignment:
Q  60 tgtagttgtaatttttgggagcttgtaggtataccttgcagacatgc 106  Q
    ||||||||||||||||||||| | |||||||||||||| || |||||    
T  13649119 tgtagttgtaatttttgggagttggtaggtataccttgtaggcatgc 13649073  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 319
Target Start/End: Complemental strand, 22370035 - 22369914
Alignment:
Q  198 aatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccaggaagacctaagaaac 297  Q
    ||||||||||| || ||||||||||| |||||||| || || |||||||| || ||| | |||||||  || ||||| | |||||||||||| || || |    
T  22370035 aatgtgagtgctatcaatggtcaagacatgtggccagaggtagaatgtgaagaaatgttacctcctgcttataagaaggcaccaggaagaccaaaaaagc 22369936  T
Q  298 taaggaggagagagcctgatga 319  Q
    | || || ||||| ||||||||    
T  22369935 ttagaagaagagaacctgatga 22369914  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 289
Target Start/End: Original strand, 51017102 - 51017193
Alignment:
Q  198 aatgtgagtgccataaatggtcaagatatgtggcctgaagttgaatgtgaggagatgcttcctcctgtgtacaagaaaggaccaggaagacc 289  Q
    ||||| ||||| || ||||||||||| |||||||| || ||||||||||||||| || | |||||||  || || || || |||||||||||    
T  51017102 aatgtaagtgctatcaatggtcaagacatgtggccagaggttgaatgtgaggagttgttacctcctgcttataaaaagggtccaggaagacc 51017193  T

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