View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_low_35 (Length: 322)
Name: NF13764_low_35
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 304
Target Start/End: Complemental strand, 7018576 - 7018297
Alignment:
| Q |
13 |
aaaatagagaggtgaacattggtaggccacattatgaaagtctcacccctaatataaatcaaatatttctaatgatttaacatgattaattggccgtgta |
112 |
Q |
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| T |
7018576 |
aaaatagagaggtgaacattggtaggccacattatgaatgtctcacccctaataaaaatcaaatatttctaatgatt----------aattggccgtgta |
7018487 |
T |
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| Q |
113 |
caatctctttacaccggcgatatataatatgaattaaattaaaataattaatataaacaatttttggagtagtaaaacaagcacaatcgagattaatatg |
212 |
Q |
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| T |
7018486 |
caatctctttacaccggcgatatataatatgaattaaattaaaataattaatagaaataatttttggagtagtaaaacaagcacaatcgagattaatatg |
7018387 |
T |
|
| Q |
213 |
agttaaggggaaccacgaataaacctgatcaacttgtgaggatgggggcctcaccattaatagaccagaccactactgctttggaacaaaac |
304 |
Q |
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| T |
7018386 |
agttaaggggaaccacgaataaacctgatcaacttgtgaggatgggggcctcaccatta--agaccagaccactactgctttggaacaaaac |
7018297 |
T |
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