View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13764_low_37 (Length: 312)
Name: NF13764_low_37
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_37 |
 | |
|
| [»] scaffold0191 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 37570162 - 37570445
Alignment:
| Q |
19 |
ctttagttggtaggttgaagaatggttttgagagtaaatttgtgcaaccagatagcggcggtggtgctaagcaagctccaattaaattccaaactgccag |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37570162 |
ctttagttggtaggttgaagaatggttttgagagtaaatttgtgcaaccagatagtggcggtggtgctaagcaagctccaattaaattccaaactgccag |
37570261 |
T |
|
| Q |
119 |
tgggaggtcgttatctatttctggtgatgcgttgaaacgcgctaggcgccttcttggtgatcctgatttgggagatttctttgatggtggagattcgctt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
37570262 |
tgggaggtcgttatctatttctggtgatgcgttgaaacgcgctaggcgccttcttggtgatcctgatttgggagatttctttgatggtggagattcactt |
37570361 |
T |
|
| Q |
219 |
ttctcgtttctggatcagggacaaaccagcacaatcacttcctccgctgaaagaagtgagagtaaaaatactcatactcctttg |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37570362 |
ttctcgtttctggatcagggacaaaccagcacaatcacttcctccgctgaaagaagtgagagtaaaaatactcatactcctttg |
37570445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 37569613 - 37569666
Alignment:
| Q |
19 |
ctttagttggtaggttgaagaatggttttgagagtaaatttgtgcaaccagata |
72 |
Q |
| |
|
|||||||| |||| ||||| ||||||||||||| |||| ||||||||||||||| |
|
|
| T |
37569613 |
ctttagttagtagattgaaaaatggttttgagaataaaattgtgcaaccagata |
37569666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0191 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 29954 - 29771
Alignment:
| Q |
19 |
ctttagttggtaggttgaagaatggttttgagagtaaatttgtgcaaccagatagcggcggtggtgctaagcaagctccaattaaattccaaactgccag |
118 |
Q |
| |
|
||||||||||||| | ||| | ||||||||||| || | |||||||||||||||| | |||||||||||||||||| | |||||||||||||||| |
|
|
| T |
29954 |
ctttagttggtagatcgaatagtggttttgagaatataattgtgcaaccagatagtgatagtggtgctaagcaagctcaatttaaattccaaactgcagc |
29855 |
T |
|
| Q |
119 |
tgggaggtcgttatctatttctggtgatgcgttgaaacgcgctaggcgccttcttggtgatcctgatttgggagatttctttga |
202 |
Q |
| |
|
|||||||| ||||| ||||| ||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29854 |
ggggaggtcattatccatttccagtgatgccttgaaacgcgctaggagccttcttggtgaccctgatttgggagatttctttga |
29771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University