View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_low_38 (Length: 307)
Name: NF13764_low_38
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 293
Target Start/End: Original strand, 183083 - 183363
Alignment:
| Q |
13 |
cagacatgttatttctattgtttcagtggacccaaaagacccaaattgagaaatttacgtacagtgaagatgtgcaggttagccgtattttcacatatta |
112 |
Q |
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| T |
183083 |
cagacatgttatttctattgtttcagtggacccaaaagacccaaattgagaaatttacatacagtgaagatgtgcaggttagccgtattttcacatatta |
183182 |
T |
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| Q |
113 |
tttaagtggtttgaactcttgaatgcttcttgattgtttaacaatagcgtcttatctgtatttgactgtggttaccagtgtacagttttggaagtcaagg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
183183 |
tttaagtggtttgaactcttgaatgcttcttgattgtttaacaatagcgtcttatctgtatttgactgtggttaccagtgtactgttttggaagtcaagg |
183282 |
T |
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| Q |
213 |
ttattgaaggctatggaactactattgatgttgttttagttaatggtgttcttcatgaaggagatcaaatagttgtatctg |
293 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183283 |
ttattgaaggctatggaactactattaatgttgttttagttaatggtgttcttcatgaaggagatcaaatagttgtatctg |
183363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 9 - 293
Target Start/End: Complemental strand, 591299 - 591015
Alignment:
| Q |
9 |
atcacagacatgttatttctattgtttcagtggacccaaaagacccaaattgagaaatttacgtacagtgaagatgtgcaggttagccgtattttcacat |
108 |
Q |
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| T |
591299 |
atcacggacatgttatttctattgtttggttggacccaaaagaccatgatcgagaaacttacttacagtgaagacgtacaggttagccttattttcacat |
591200 |
T |
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| Q |
109 |
attatttaagtggtttgaactcttgaatgcttcttgattgtttaacaatagcgtcttatctgt-atttgactgtggttaccagtgtacagttttggaagt |
207 |
Q |
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| T |
591199 |
aatattgaagtggtt-gaactgttgaatgcttcttgattgtttaacaatagagacctaactgttatttgactgtggttaccagtgtactgttttggaagt |
591101 |
T |
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| Q |
208 |
caaggttattgaaggctatggaactactattgatgttgttttagttaatggtgttcttcatgaaggagatcaaatagttgtatctg |
293 |
Q |
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| T |
591100 |
caaggttattgaaggctatggaactactatcgatgttgttttagctcaaggtgttcttcgtcgtggtgatcaaatagttgtgtctg |
591015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 190 - 293
Target Start/End: Complemental strand, 29219700 - 29219597
Alignment:
| Q |
190 |
gtgtacagttttggaagtcaaggttattgaaggctatggaactactattgatgttgttttagttaatggtgttcttcatgaaggagatcaaatagttgta |
289 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
29219700 |
gtgtactgttttgcaagtcaaggttattgaaggctatggaactactactgatgttgttttagttaatggtgttcttcatgaaggtggtcaaatagttgta |
29219601 |
T |
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| Q |
290 |
tctg |
293 |
Q |
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|||| |
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| T |
29219600 |
tctg |
29219597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 44628086 - 44628208
Alignment:
| Q |
171 |
tatttgactgtggttaccagtgtacagttttggaagtcaaggttattgaaggctatggaactactattgatgttgttttagttaatggtgttcttcatga |
270 |
Q |
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||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44628086 |
tatttgactgtggctaccagtgtaccgttttggaagtcaaggttattgaaggccatggaactactattgatgttgttttagttaatggtgttcttcatga |
44628185 |
T |
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| Q |
271 |
aggagatcaaatagttgtatctg |
293 |
Q |
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||| ||||||||||||||||||| |
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| T |
44628186 |
aggggatcaaatagttgtatctg |
44628208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 171 - 293
Target Start/End: Original strand, 44606602 - 44606724
Alignment:
| Q |
171 |
tatttgactgtggttaccagtgtacagttttggaagtcaaggttattgaaggctatggaactactattgatgttgttttagttaatggtgttcttcatga |
270 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44606602 |
tatttgactgtgtctaccagtgtaccgttttggaagtcaaggttatcgaaggccatggaactactattgatgttgttttagttaatggtgttcttcatga |
44606701 |
T |
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| Q |
271 |
aggagatcaaatagttgtatctg |
293 |
Q |
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||| ||||||||||||||||||| |
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| T |
44606702 |
aggggatcaaatagttgtatctg |
44606724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 179 - 290
Target Start/End: Original strand, 41373264 - 41373375
Alignment:
| Q |
179 |
tgtggttaccagtgtacagttttggaagtcaaggttattgaaggctatggaactactattgatgttgttttagttaatggtgttcttcatgaaggagatc |
278 |
Q |
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||||| |||||||||| ||||||| ||||| | | |||||| || |||||| ||| || ||||||||||||||||||||||||| ||||||||||||| |
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| T |
41373264 |
tgtggataccagtgtattattttggatgtcaatgattttgaagactgtggaaccactcttaatgttgttttagttaatggtgttctacatgaaggagatc |
41373363 |
T |
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| Q |
279 |
aaatagttgtat |
290 |
Q |
| |
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|||||| ||||| |
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| T |
41373364 |
aaatagctgtat |
41373375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 41062312 - 41062405
Alignment:
| Q |
189 |
agtgtacagttttggaagtcaaggttattgaaggctatggaactactattgatgttgttttagttaatggtgttcttcatgaaggagatcaaat |
282 |
Q |
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||||||| |||||||| |||||| | || ||||| ||||||| |||| |||||||||||||||||||||||||||||| |||||||||||| |
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| T |
41062312 |
agtgtactgttttggatgtcaagctccttcaaggccatggaaccgctatcaatgttgttttagttaatggtgttcttcatgtaggagatcaaat |
41062405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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