View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_low_4 (Length: 652)
Name: NF13764_low_4
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 620; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 620; E-Value: 0
Query Start/End: Original strand, 16 - 651
Target Start/End: Complemental strand, 38485378 - 38484743
Alignment:
| Q |
16 |
ctttagccgttcgttatcccttttctccttgaaaaaatctcggatagaaatctcataaagagcctgaagggtgtccaccaatcggttagaatctttcttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38485378 |
ctttagccgttcgttatcccttttctccttgaaaaaatctcggatagaaatctcataaagagcctgaagggtgtccaccaatcggttagaatctttcttt |
38485279 |
T |
|
| Q |
116 |
ccattatttaacaattcaagaagttttatcaacttgctatggagctggggaagtgcagtagttttgaatactttggtgaatttcccaatctcaattgaat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38485278 |
ccattatttaacaattcaagaagttttatcaacttgctatggagctggggaagtgcagtagttttgaatactttggtgaatttcccaatctcaattgaat |
38485179 |
T |
|
| Q |
216 |
gatcaatttcttgaaacatagcagtcacaatagaatgttcttcactatcaggtctgataatctgtcgaaacaggtgtttgatacagtcatatgcttcaac |
315 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38485178 |
gatcaacttcttgaaacatagcagtcacaatagaattttcttcactatcaggtctgataatctgtcgaaacaggtgtttgatacagtcatatgcttcaac |
38485079 |
T |
|
| Q |
316 |
cacagcgcatctcctgaactcgtacttacatatctttctccaaagcctcctatcatgagaatcaactagttctttagcctcgcttaaagccagtagcaac |
415 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38485078 |
cacagcgcatctcctgaactcatacttacatatctttctccaaagcctcctatcatgagaatcaactagttctttagcctcgcttaaagccagtagcaac |
38484979 |
T |
|
| Q |
416 |
tcattgcagagaagaaaacacggccaacgaataaccctaacattccaagcattgtttggcagctccagcagctcaacctctttatcagaaatgatatctt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38484978 |
tcattgcagagaagaaaacacggccaacgaataaccctaacattccaagcattgtttggcagctccagcagctcaacctctttatcagaaatgatatctt |
38484879 |
T |
|
| Q |
516 |
cctctctaaaggacataattatctcgttccataacaaagcaaatttcttggcatcagcctggttagaatcgagcttcttaaaaggatgaccaagtccata |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38484878 |
cctctctaaaggacataattatctcgttccataacaaagcaaatttcttggcatcagcctggttagaatcgagcttcttaaaaggatgaccaagtccata |
38484779 |
T |
|
| Q |
616 |
ccttagcttcatcctatgaattgcatccctatgctt |
651 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| |
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| T |
38484778 |
ccttagcttcatcctatgaattgcatccctaagctt |
38484743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 41 - 643
Target Start/End: Complemental strand, 30119749 - 30119147
Alignment:
| Q |
41 |
tccttgaaaaaatctcggatagaaatctcataaagagcctgaagggtgtccaccaatcggttagaatctttctttccattatttaacaattcaagaagtt |
140 |
Q |
| |
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|||||||||| |||| ||||| |||||||||||| ||||||||||| | ||||| | | ||||||||||| || || || || || | ||||| |
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| T |
30119749 |
tccttgaaaaggtctctgatagcaatctcataaagcgcctgaagggtattcaccacttgattagaatctttgacaggcttgttcaataactcgacaagtt |
30119650 |
T |
|
| Q |
141 |
ttatcaacttgctatggagctggggaagtgcagtagttttgaatactttggtgaatttcccaatctcaattgaatgatcaatttcttgaaacatagcagt |
240 |
Q |
| |
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||||||||||| || |||||||| |||||||| ||||||||| || ||||||||| ||||||||| || ||||||||||| ||||||| | |||| |
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| T |
30119649 |
ttatcaacttgtggtgaagctggggcagtgcagttgttttgaatgtattagtgaatttctcaatctcaagagagtgatcaatttcctgaaacagaacagt |
30119550 |
T |
|
| Q |
241 |
cacaatagaatgttcttcactatcaggtctgataatctgtcgaaacaggtgtttgatacagtcatatgcttcaaccacagcgcatctcctgaactcgtac |
340 |
Q |
| |
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|||||| ||||| |||||||| | ||| ||||||||| ||| || ||| || | || ||||||||||| | |||||| || | ||| |||| | |
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| T |
30119549 |
cacaatcgaatgctcttcactgttgggtttgataatctcatgaagcaagtgcttcacactatcatatgcttcgatcacagcacagcgtctgtactcagag |
30119450 |
T |
|
| Q |
341 |
ttacatatctttctccaaagcctcctatcatgagaatcaactagttctttagcctcgcttaaagccagtagcaactcattgcagagaagaaaacacggcc |
440 |
Q |
| |
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| |||||||| | |||||||| ||||| | || |||||||||||| |||| || | ||| || || ||||| ||||||||||||||||| |||| |
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| T |
30119449 |
ctgcatatcttcttataaagcctcttatcagtatcattaactagttctttggcctgactgagagcaagcagtaactcgttgcagagaagaaaacatggcc |
30119350 |
T |
|
| Q |
441 |
aacgaataaccctaacattccaagcattgtttggcagctccagcagctcaacctctttatcagaaatgatatcttcctctctaaaggacataattatctc |
540 |
Q |
| |
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|||||||||||| ||||||||||| || | ||||||||||||||||||||||||| | ||||| || ||||| ||||| ||||| |||| ||||||||| |
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|
| T |
30119349 |
aacgaataacccgaacattccaagagttctgtggcagctccagcagctcaacctctctgtcagagataatatcctcctccctaaaagacaaaattatctc |
30119250 |
T |
|
| Q |
541 |
gttccataacaaagcaaatttcttggcatcagcctggttagaatcgagcttcttaaaaggatgaccaagtccataccttagcttcatcctatgaattgca |
640 |
Q |
| |
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|||||||| ||||||||| || ||||| ||| |||||||||| ||||||||| | | || ||||||| |||||||| ||||||| |||||| || ||| |
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| T |
30119249 |
gttccatatcaaagcaaacttgttggcctcaacctggttagactcgagcttcctgtagggccgaccaagcccatacctgagcttcaacctatggatggca |
30119150 |
T |
|
| Q |
641 |
tcc |
643 |
Q |
| |
|
||| |
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|
| T |
30119149 |
tcc |
30119147 |
T |
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