View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13764_low_40 (Length: 293)

Name: NF13764_low_40
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13764_low_40
NF13764_low_40
[»] chr7 (8 HSPs)
chr7 (6-133)||(33416476-33416603)
chr7 (160-282)||(33416327-33416449)
chr7 (160-279)||(33410481-33410600)
chr7 (160-279)||(33424383-33424502)
chr7 (160-282)||(33428087-33428209)
chr7 (191-279)||(33436535-33436623)
chr7 (6-113)||(33424566-33424674)
chr7 (58-113)||(33410664-33410719)
[»] scaffold0262 (1 HSPs)
scaffold0262 (217-282)||(5180-5245)
[»] chr1 (2 HSPs)
chr1 (178-279)||(24985049-24985150)
chr1 (178-279)||(24990879-24990980)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 6 - 133
Target Start/End: Complemental strand, 33416603 - 33416476
Alignment:
Q  6 taggtatgtaaaaggaaaaaataaatgtccatttggtttcaagtttatttagttcatagtcaattgcttaactaattagtgtatctcatagttataatta 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33416603 taggtatgtaaaaggaaaaaataaatgtccatttggtttcaagtttatttagttcatagtcaattgcttaactaattagtgtatctcatagttataatta 33416504  T
Q  106 acttttgtatttatcaaacatgatctaa 133  Q
    ||||||||||||||||||||||||||||    
T  33416503 acttttgtatttatcaaacatgatctaa 33416476  T

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Target: chr7; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 160 - 282
Target Start/End: Complemental strand, 33416449 - 33416327
Alignment:
Q  160 caactatgacccttcaaggcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaag 259  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33416449 caactatgacccttcaaggcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaag 33416350  T
Q  260 gatatcattcaactaaaaactga 282  Q
    |||||||||||||||||||||||    
T  33416349 gatatcattcaactaaaaactga 33416327  T

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Target: chr7; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 33410600 - 33410481
Alignment:
Q  160 caactatgacccttcaaggcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaag 259  Q
    ||||||||| ||  |||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||    
T  33410600 caactatgatccggcaaggcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaag 33410501  T
Q  260 gatatcattcaactaaaaac 279  Q
    ||||||||||||||||||||    
T  33410500 gatatcattcaactaaaaac 33410481  T

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Target: chr7; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 33424502 - 33424383
Alignment:
Q  160 caactatgacccttcaaggcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaag 259  Q
    ||||||||| ||  |||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||||    
T  33424502 caactatgatccggcaaggcacaatgttttcaaagtaaatggcacactctttcaaagctgcacttttccaccaaaaaatgaagcactttctacaggaaag 33424403  T
Q  260 gatatcattcaactaaaaac 279  Q
    ||||||||||||||||||||    
T  33424402 gatatcattcaactaaaaac 33424383  T

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Target: chr7; HSP #5
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 160 - 282
Target Start/End: Original strand, 33428087 - 33428209
Alignment:
Q  160 caactatgacccttcaaggcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaag 259  Q
    |||||||||||||||||| ||||||||||| |||||||| |||||| |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  33428087 caactatgacccttcaagacacaatgttttcaaagtgaacggcacattctttcagagatgcacttttccaccacaaaacgaagcactttctaccggaaag 33428186  T
Q  260 gatatcattcaactaaaaactga 282  Q
    ||||| ||||  ||||| |||||    
T  33428187 gatattattcccctaaagactga 33428209  T

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Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 191 - 279
Target Start/End: Complemental strand, 33436623 - 33436535
Alignment:
Q  191 aaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaaggatatcattcaactaaaaac 279  Q
    ||||||||||| ||||| ||  ||  ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||    
T  33436623 aaagtgaatggtacactttttaaggactgcacttttccaccaaaaaatgaagcactctctacgggaaaggatatcattcaactaaaaac 33436535  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 33424674 - 33424566
Alignment:
Q  6 taggtatgtaaaagg-aaaaaataaatgtccatttggtttcaagtttatttagttcatagtcaattgcttaactaattagtgtatctcatagttataatt 104  Q
    ||||||||||||||| |||||| |||| | ||||||||||||||||||||||||| ||| |||| ||| |||||| |||||| || | ||  ||||||||    
T  33424674 taggtatgtaaaagggaaaaaacaaattttcatttggtttcaagtttatttagtttataatcaactgcataactagttagtgcatattatgattataatt 33424575  T
Q  105 aacttttgt 113  Q
    |||||||||    
T  33424574 aacttttgt 33424566  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 113
Target Start/End: Complemental strand, 33410719 - 33410664
Alignment:
Q  58 ttcatagtcaattgcttaactaattagtgtatctcatagttataattaacttttgt 113  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  33410719 ttcatattcaattgtttaactaattagtgtatctcataattataattaacttttgt 33410664  T

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Target: scaffold0262 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 217 - 282
Target Start/End: Original strand, 5180 - 5245
Alignment:
Q  217 ctgcacttttccaccaaaaaacgaagcactttctaccggaaaggatatcattcaactaaaaactga 282  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  5180 ctgcacttttccaccaaaaaatgaagcactttctacaggaaaggatatcattcaactaaaaactga 5245  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 24985049 - 24985150
Alignment:
Q  178 gcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaaggatatcattcaactaaaa 277  Q
    ||||||||| || |||||| |||| | |||||| || ||||||||||||||| || |||| ||||||||||| |||||||||||  | |||||||| |||    
T  24985049 gcacaatgtcttcaaagtggatggtaaactctttcaaagctgcacttttccatcagaaaatgaagcactttccaccggaaaggacgttattcaactgaaa 24985148  T
Q  278 ac 279  Q
    ||    
T  24985149 ac 24985150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 178 - 279
Target Start/End: Original strand, 24990879 - 24990980
Alignment:
Q  178 gcacaatgtttttaaagtgaatggcacactcttccagagctgcacttttccaccaaaaaacgaagcactttctaccggaaaggatatcattcaactaaaa 277  Q
    ||||||||| || |||||| |||| | |||||| || ||||||||||||||| || |||| ||||||||||| |||||||||||  | |||||||| |||    
T  24990879 gcacaatgtcttcaaagtggatggtaaactctttcaaagctgcacttttccatcagaaaatgaagcactttccaccggaaaggacgttattcaactgaaa 24990978  T
Q  278 ac 279  Q
    ||    
T  24990979 ac 24990980  T

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