View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_low_41 (Length: 291)
Name: NF13764_low_41
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_41 |
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Alignment Details
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 7768993 - 7769244
Alignment:
| Q |
19 |
gaatctactatgtacttcaagacatggtagaatttacctatattcttacaaggaaattcacaatgaaattaatctcttgattggggaaaaatacaatact |
118 |
Q |
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| T |
7768993 |
gaatctactatgtacttcaagacatggtagaatttacct-------tacaaggaaattcataatgaaattaatctcttgattggggaaaaattcaatact |
7769085 |
T |
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| Q |
119 |
aaagtcattcacctattttgaattttctgaattggcaaaactgtctaaaattgtaaaatgttattcaaaataatctctctattaccttccatcgttagaa |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
7769086 |
aaagtcattcacctattttgaattttatgaattggcaaaactgtctaaaattgtaaaatgttattcaaaataatctctctattacctttcatcgttagaa |
7769185 |
T |
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| Q |
219 |
attatgatgtgacacgttaacctttcgtatcgaaattacatggatttcatttctcacattcat |
281 |
Q |
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||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
7769186 |
attatgatg----acgttaacctttcgtatcgaaattacatggagttcatttctcacattcat |
7769244 |
T |
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