View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_low_44 (Length: 276)
Name: NF13764_low_44
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 21975639 - 21975375
Alignment:
| Q |
1 |
accttgattagagacttgatgatgggagcagcaaaggcaacatattcccaaggtatcttgataatattcttattagtattcataatgataataatgataa |
100 |
Q |
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| T |
21975639 |
accttgattagagacttgatgatgggagcagcaaaggcaacatatttccaaggtatcttgattatgttattattagtattcataatattcataatgatga |
21975540 |
T |
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| Q |
101 |
gttagttgagttttaattt-tatttt-cttttcctgaataaagcttgggagacaaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggc |
198 |
Q |
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| T |
21975539 |
------tgagttttaatttgtatttttctattcatgaataaagcttgggatgcaaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggc |
21975446 |
T |
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| Q |
199 |
tgagaggtcacaaccctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgtgatgatg |
269 |
Q |
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| T |
21975445 |
tgagaggtcacaacccaaaattatggtgtaagcatgccttctcctattatcccaagtgtgatgtgctgatg |
21975375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 44478539 - 44478803
Alignment:
| Q |
1 |
accttgattagagacttgatgatgggagcagcaaaggcaacatattcccaaggtatcttgataatattcttattagtattcataatgataataatgataa |
100 |
Q |
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| T |
44478539 |
accttgattagagacttgatgatgggagcagcaaaggcaacatatttccaaggtatcttgattattttattattggtattcataatattcataatgatga |
44478638 |
T |
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| Q |
101 |
gttagttgagttttaattt-tatttt-cttttcctgaataaagcttgggagacaaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggc |
198 |
Q |
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| T |
44478639 |
------tgagttttaatttgtatttttctattcatgaataaagcttgggatgcaaagatgaatgagctcaagaaggttgatcatgctgcatgggaatggc |
44478732 |
T |
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| Q |
199 |
tgagaggtcacaaccctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgtgatgatg |
269 |
Q |
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| T |
44478733 |
tgagaggtcacaacccaaaattatggtgtaagcatgccttctcctattatcccaagtgtgatgtgctgatg |
44478803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 41770989 - 41770940
Alignment:
| Q |
213 |
cctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgt |
262 |
Q |
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| T |
41770989 |
cctaaattatggtgtaagcatgcattttcatattatcctaagtgtgatgt |
41770940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 47735733 - 47735782
Alignment:
| Q |
213 |
cctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgt |
262 |
Q |
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| T |
47735733 |
cctaaattatggtgtaagcatgcattttcatattatcctaagtgtgatgt |
47735782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 213 - 262
Target Start/End: Complemental strand, 13649461 - 13649412
Alignment:
| Q |
213 |
cctaaattatggtgtaagcatgccttctcctactatcccaagtgtgatgt |
262 |
Q |
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| T |
13649461 |
cctaaattatggtgtaagcatgcattttcatattatcctaagtgtgatgt |
13649412 |
T |
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