View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_low_45 (Length: 275)
Name: NF13764_low_45
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_45 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 9e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 33855812 - 33855635
Alignment:
| Q |
1 |
attgttagacacctttgattagaagtgttggtgctacaaagtaatcacatgtgcatgtttgttctatcgttgttaaacatcttattagaattgtcgatgc |
100 |
Q |
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| T |
33855812 |
attgttagacacttttgattagaagtgttggtgctacaaagtaatcacatgtgcgtgtttgttctatcgttgttaaacaccttattagaattgtcggtgc |
33855713 |
T |
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| Q |
101 |
tacaaagtgagaaagataaatgtaatcacatgtgcgtatttattagaacatgatgaattaaatttgtgtttatgtcaa |
178 |
Q |
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| T |
33855712 |
tacaaaatgagaaagataaatgtaatcacatgtgcgtatttattagaacatgatgaattaaatttgtgttcatgtcaa |
33855635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 176 - 266
Target Start/End: Complemental strand, 33855255 - 33855165
Alignment:
| Q |
176 |
caacggcttttgctgttagaattaacttagttaggtgtataaactaatatttttgtatgcacatgccttgaatcattagtttgttgatgat |
266 |
Q |
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| T |
33855255 |
caacggcttttgctgttagaattaacttagttaggtggttaaactaatatttttgtatgcacatgccttgaatcattagtttgttgatgat |
33855165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 663756 - 663724
Alignment:
| Q |
9 |
acacctttgattagaagtgttggtgctacaaag |
41 |
Q |
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| T |
663756 |
acacctttgataagaagtgttggtgctacaaag |
663724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 42
Target Start/End: Original strand, 18622513 - 18622542
Alignment:
| Q |
13 |
ctttgattagaagtgttggtgctacaaagt |
42 |
Q |
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| T |
18622513 |
ctttgattagaagtgttggtgctacaaagt |
18622542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 48358685 - 48358717
Alignment:
| Q |
9 |
acacctttgattagaagtgttggtgctacaaag |
41 |
Q |
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| T |
48358685 |
acacctttgattagaagtgtcggtgctacaaag |
48358717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 41
Target Start/End: Original strand, 22543521 - 22543553
Alignment:
| Q |
9 |
acacctttgattagaagtgttggtgctacaaag |
41 |
Q |
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||||||||||||||| ||||||||||||||||| |
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| T |
22543521 |
acacctttgattagaggtgttggtgctacaaag |
22543553 |
T |
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