View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_low_47 (Length: 268)
Name: NF13764_low_47
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 8445419 - 8445654
Alignment:
| Q |
10 |
agatgaatgcgtttctgtcaatnnnnnnntgtggaagcttttctagactttgttttgagaattaaaaggaaaagagaagtgagtgttttgggaggataga |
109 |
Q |
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| T |
8445419 |
agatgaatgcgtttctgtcaataaaaaa-tgtgcaagcttttctagactttgttttgagaattaaaaggaaaagagaagtgagtgttttgggaggataga |
8445517 |
T |
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| Q |
110 |
atgagtaaagggaagtggaagacacctcaacttgtatgaatgtttatcnnnnnnncaataaaactaaaattattctgtatggagagccctaaaatacatt |
209 |
Q |
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| T |
8445518 |
atgagtaaagggaagtggaagacacctcaacttgtatggatgtttatctttttttcaataaaactaaaattattctgtatggagagccctaaaatacatt |
8445617 |
T |
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| Q |
210 |
tgaaattgaaatgatggatatgatatacaattgggca |
246 |
Q |
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| T |
8445618 |
tgaaattgaaatgatggatatgatatacaattgggca |
8445654 |
T |
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