View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13764_low_5 (Length: 600)

Name: NF13764_low_5
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13764_low_5
NF13764_low_5
[»] chr4 (2 HSPs)
chr4 (160-584)||(27724160-27724576)
chr4 (18-144)||(27723898-27724024)
[»] chr3 (1 HSPs)
chr3 (266-364)||(55171459-55171557)
[»] chr6 (1 HSPs)
chr6 (490-541)||(4355998-4356049)
[»] chr8 (1 HSPs)
chr8 (498-547)||(40282701-40282750)
[»] chr2 (1 HSPs)
chr2 (488-541)||(22126980-22127033)
[»] chr1 (2 HSPs)
chr1 (486-519)||(36936329-36936362)
chr1 (490-539)||(40496946-40496995)


Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 160 - 584
Target Start/End: Original strand, 27724160 - 27724576
Alignment:
Q  160 actctagtttttatttgtaacaagattcaatcaaacacctttgaattctttatgattccatatattcattttgcagacaaattttgatgcaccagaagga 259  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27724160 actctagtttttatttgtaacatgattcaatcaaacacctttgaattctttatgattccatatattcattttgcagacaaattttgatacaccagaagga 27724259  T
Q  260 acaaacccagttgccatcggaatggaaggtatggcaaaaggaatgatttgggtcaatggtgaaagcattggtcgtcactggatgagctacctctctcctc 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27724260 acaaacccagttgccatcggaatggaaggtatggcaaaaggaatgatttgggttaatggtgaaagcattggtcgtcactggatgagctacctctctcctc 27724359  T
Q  360 ttggaaagcctactcaatcagagtaagaaaatctgaatcaattaccagtttagtctctaaaatttagtgactgaattttttattcactcgaatcttgcta 459  Q
    ||||||||||||||||||||||||||||||||| |||||         |||| || ||  ||||||||||||||||||||||||||||||||||||||||    
T  27724360 ttggaaagcctactcaatcagagtaagaaaatcggaatc--------ttttattcactcgaatttagtgactgaattttttattcactcgaatcttgcta 27724451  T
Q  460 agagtcgcacattagatcatatttgacatgaaaatgtatttataagtggtggacagtcctcgccttataaatcggttttgtatgagttaggttagatggt 559  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27724452 agagtcgcacattagatcatatttgacatgaaaatgtatttataagtggtggacagtcctcgccttataaatcggttttgtatgagttaggttagatggt 27724551  T
Q  560 ataacagtttgtccaatatctgttg 584  Q
    |||||||||||||||||||||||||    
T  27724552 ataacagtttgtccaatatctgttg 27724576  T

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Target: chr4; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 27723898 - 27724024
Alignment:
Q  18 agtagaatggaaagatggcaagggaaaaggatcaactatctcctggtacaaggtattggccatttagattaaaacatatctttcgtcctataaaattacg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27723898 agtagaatggaaagatggcaagggaaaaggatcaactatctcctggtacaaggtattggccatttagattaaaacatatctttcgtcctataaaattacg 27723997  T
Q  118 aatttataagtttagtccctacaaaaa 144  Q
    |||||||||||| ||||||||||||||    
T  27723998 aatttataagttcagtccctacaaaaa 27724024  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 364
Target Start/End: Complemental strand, 55171557 - 55171459
Alignment:
Q  266 ccagttgccatcggaatggaaggtatggcaaaaggaatgatttgggtcaatggtgaaagcattggtcgtcactggatgagctacctctctcctcttgga 364  Q
    |||||||||||| | |||   ||||||| |||||||||||||||||| || ||  ||||||| |||||||||||||||   | |||||| |||||||||    
T  55171557 ccagttgccatcaggatgactggtatgggaaaaggaatgatttgggtgaacggaaaaagcatcggtcgtcactggatgtcattcctctcccctcttgga 55171459  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 490 - 541
Target Start/End: Original strand, 4355998 - 4356049
Alignment:
Q  490 aaaatgtatttataagtggtggacagtcctcgccttataaatcggttttgta 541  Q
    |||||||||||||||||||  |||| ||||||||||| ||| ||||||||||    
T  4355998 aaaatgtatttataagtgggagacattcctcgccttacaaaccggttttgta 4356049  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 498 - 547
Target Start/End: Original strand, 40282701 - 40282750
Alignment:
Q  498 tttataagtggtggacagtcctcgccttataaatcggttttgtatgagtt 547  Q
    ||||||||||| ||||||||||| |||||||| |||||||| || |||||    
T  40282701 tttataagtggcggacagtcctcaccttataagtcggttttctaggagtt 40282750  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 541
Target Start/End: Original strand, 22126980 - 22127033
Alignment:
Q  488 tgaaaatgtatttataagtggtggacagtcctcgccttataaatcggttttgta 541  Q
    ||||||||| |||||||||||||| |||||||| ||||| ||| || |||||||    
T  22126980 tgaaaatgtgtttataagtggtgggcagtcctcaccttacaaaccgattttgta 22127033  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 519
Target Start/End: Complemental strand, 36936362 - 36936329
Alignment:
Q  486 catgaaaatgtatttataagtggtggacagtcct 519  Q
    ||||||||||| ||||||||||||||||||||||    
T  36936362 catgaaaatgtgtttataagtggtggacagtcct 36936329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 539
Target Start/End: Complemental strand, 40496995 - 40496946
Alignment:
Q  490 aaaatgtatttataagtggtggacagtcctcgccttataaatcggttttg 539  Q
    ||||||| ||||||||||| || |||| |||||||||||| |||||||||    
T  40496995 aaaatgtgtttataagtggcgggcagttctcgccttataagtcggttttg 40496946  T

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