View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_low_50 (Length: 266)
Name: NF13764_low_50
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 29219333 - 29219092
Alignment:
| Q |
8 |
agattattctgcactaggttgatattatttttattaatctggtgcttaagtatggtttgggtaggaaaaaggcatttagaaactagaatcggtgcaaata |
107 |
Q |
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| T |
29219333 |
agattcttttgcactaggttgatattatttttattaatctggtgcttaagtatggtttgggtaggaaagaggcatttagaaactagaatcggtgcaaata |
29219234 |
T |
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| Q |
108 |
tgataagtgttggaaacttaggaaatgattacaatgttcttaacatgaagaaactgagatatagcaagtaaatttgttcatagttcatattactatgctg |
207 |
Q |
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| T |
29219233 |
tgataagtgttggaaactaagcaaatgattacaatgttcttaacatgatgaaactgagatatagcaagtaaatttgttcatagttcatattactatgctg |
29219134 |
T |
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| Q |
208 |
gaaggaatttggaactatatcactatgagtatgatctataac |
249 |
Q |
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| T |
29219133 |
gaaggaatttggaactatatcactatgagtatgatctataac |
29219092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 62 - 228
Target Start/End: Complemental strand, 590672 - 590494
Alignment:
| Q |
62 |
gtttgggtaggaaaaaggcatttagaaactagaatcggtgcaaatatgataagtgttggaaacttaggaaatgattacaatgttcttaacatgaagaaac |
161 |
Q |
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| T |
590672 |
gtttgggtaggaaaaaggcatttagaaatttgaatgggtgcaaatac--taagtgttggaaacttaggaaatgattattatattcttaacatgaaggaac |
590575 |
T |
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| Q |
162 |
tgagatatagcaagtaaatttg--------------ttcatagttcatattactatgctggaaggaatttggaactatatc |
228 |
Q |
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| T |
590574 |
tgagatatagcaagtgtagttgttcatgtttcatacttcataattcatattactatgctggaaggaatttggaactatatc |
590494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 183683 - 183780
Alignment:
| Q |
36 |
ttttattaatctggtgcttaagtatggtttgggtaggaaaaaggcatttagaaactagaatcggtgcaaatatgataagtgttggaaacttaggaaatga |
135 |
Q |
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| T |
183683 |
ttttattgatttggtactaaagtatggtttgggtaggaaaatggctttaagaaatttgaacgagcgcaaata--ataagtgttggaaacataggacatga |
183780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 198
Target Start/End: Original strand, 44628455 - 44628539
Alignment:
| Q |
114 |
gtgttggaaacttaggaaatgattacaatgttcttaacatgaagaaactgagatatagcaagtaaatttgttcatagttcatatt |
198 |
Q |
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| T |
44628455 |
gtgttagaagcttgggaaatgattatgagattcttaacatgaaggaaccgagttatagcaagtatagttgttcatagctcatatt |
44628539 |
T |
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