View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13764_low_56 (Length: 251)
Name: NF13764_low_56
Description: NF13764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13764_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 31602152 - 31601911
Alignment:
| Q |
1 |
tcccatgctatatttctcacatctctgaatatctattgcttaccatttccttcgttttacgttacaaaatgatttgacaaactcaatgcagcagcagctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31602152 |
tcccatgctatatttctcacatctctgaatatctattgcttaccatttccttcgttttacgttacaaaatgatttgacaaactcaatgcagcagcagctg |
31602053 |
T |
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| Q |
101 |
aaatagcatatgccaaaggcagacgtggattacatttttatgatcatgccttgtatttttaatgacagtgaggatcattctataatgacaaggactcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31602052 |
aaatagcatatgccaaaggcagacgtggattaca--tttatgatcatgccttgtatttttaatgacagtgaggatcattctataatgacaaggactcaaa |
31601955 |
T |
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| Q |
201 |
gtgtaatgagtcatggcctttaccaaaattataagttcatctct |
244 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31601954 |
gtgtaatgagtcatggcctttaccaaaattataagttcatctct |
31601911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 85 - 225
Target Start/End: Original strand, 33086409 - 33086538
Alignment:
| Q |
85 |
aatgcagcagcagctgaaatagcatatgccaaaggcagacgtggattacatttttatgatcatgccttgtatttttaatgacagtgaggatcattctata |
184 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||| ||| || |||||||||||||||||||||||||||||||||||||| |
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| T |
33086409 |
aatgcagcagcagctgaaatagcatatgccca---------tggattacattt--atgctcgtgccttgtatttttaatgacagtgaggatcattctata |
33086497 |
T |
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| Q |
185 |
atgacaaggactcaaagtgtaatgagtcatggcctttacca |
225 |
Q |
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| T |
33086498 |
atgacaaggactcaaagggtaatgagccttggcctttacca |
33086538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 201
Target Start/End: Original strand, 7991610 - 7991765
Alignment:
| Q |
44 |
catttccttcgttttacgttacaaaatgatttgacaaactcaatgcagcagcagctgaaatagcatatgccaaaggcagacgtggattacatttttatga |
143 |
Q |
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|||||||||| | || | |||||||| |||||| ||||||||| ||||||||||||| || ||||||||||||| |||||| || ||||| || | |
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| T |
7991610 |
catttccttcatattgcattacaaaaggatttggcaaactcaaagcagcagcagctgcaacagcatatgccaaaagcagacttgagttaca--aatacgc |
7991707 |
T |
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| Q |
144 |
tcatgccttgtatttttaatgacagtgaggatcattctataatgacaaggactcaaag |
201 |
Q |
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| | |||||||||||| || ||||| |||||||||||| |||||| ||||||||||| |
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| T |
7991708 |
ttgtaccttgtattttttataacagtaaggatcattctagaatgacgaggactcaaag |
7991765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 201
Target Start/End: Complemental strand, 49777704 - 49777549
Alignment:
| Q |
44 |
catttccttcgttttacgttacaaaatgatttgacaaactcaatgcagcagcagctgaaatagcatatgccaaaggcagacgtggattacatttttatga |
143 |
Q |
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|||||||||| | || | |||||||| |||||| ||||||||| ||||||||||||| || ||||||||||||| |||||| || |||| |||| |
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| T |
49777704 |
catttccttcatattgcattacaaaaggatttggcaaactcaaagcagcagcagctgcaacagcatatgccaaaagcagacttgagttac--gaatatgc |
49777607 |
T |
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| Q |
144 |
tcatgccttgtatttttaatgacagtgaggatcattctataatgacaaggactcaaag |
201 |
Q |
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| | |||||||||||| || ||||| |||||||||||| |||||| ||||||||||| |
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| T |
49777606 |
ttgtaccttgtattttttataacagtaaggatcattctagaatgacgaggactcaaag |
49777549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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